RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 ZNF534Q76KX8 674 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 TAS1R1Q7RTX1 841 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 CCDC91Q7Z6B0 441 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 PIGWQ7Z7B1 504 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 ARHGAP12Q8IWW6 846 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 KLHDC8BQ8IXV7 354 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 RNF168Q8IYW5 571 aaPredicted RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 LRRC34Q8IZ02 419 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 C4orf33Q8N1A6 199 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 GBP7Q8N8V2 638 aaPredicted RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 BANPQ8N9N5 519 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 PPHLN1Q8NEY8 458 aaKnown RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 GDAP1Q8TB36 358 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 DENND1AQ8TEH3 1009 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 SREK1Q8WXA9 508 aaKnown RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 APOPT1Q96IL0 206 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 MYRFLQ96LU7 910 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 ZNF599Q96NL3 588 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 YME1L1Q96TA2 773 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 CPNE1Q99829 537 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 TBL1YQ9BQ87 522 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 FSD1LQ9BXM9 530 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 PITPNM3Q9BZ71 974 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 PRKD2Q9BZL6 878 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 SLC25A51Q9H1U9 297 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 ACTR5Q9H9F9 607 aaPredicted RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 CYP4F11Q9HBI6 524 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 MRM3Q9HC36 420 aaKnown RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 PRDM5Q9NQX1 630 aaPredicted RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 OSER1Q9NX31 292 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 MKS1Q9NXB0 559 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 PRKAG2Q9UGJ0 569 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 NUDT5Q9UKK9 219 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 RPS6KL1Q9Y6S9 549 aa11.35□□□□□ -0.59
SKA2-204ENST00000578519 COL4A4P53420 1690 aaPredicted RBP11.35□□□□□ -0.59
SKA2-204ENST00000578519 A0A1W2PPM1 405 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 I6L893 689 aaPredicted RBP11.34□□□□□ -0.59
SKA2-204ENST00000578519 TROVE2P10155 538 aaKnown RBP eCLIP11.34□□□□□ -0.59
SKA2-204ENST00000578519 GP5P40197 560 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 CSE1LP55060 971 aaKnown RBP11.34□□□□□ -0.59
SKA2-204ENST00000578519 CDH4P55283 916 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 PDE1BQ01064 536 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 PPIGQ13427 754 aaKnown RBP eCLIP11.34□□□□□ -0.59
SKA2-204ENST00000578519 CRYMQ14894 314 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 TCTN1Q2MV58 587 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 RNF187Q5TA31 235 aaPredicted RBP11.34□□□□□ -0.59
SKA2-204ENST00000578519 PIK3R6Q5UE93 754 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 ATG16L1Q676U5 607 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 RAP1GAP2Q684P5 730 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 PDPK2PQ6A1A2 396 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 FBXL22Q6P050 247 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 LVRNQ6Q4G3 990 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 NLRP9Q7RTR0 991 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 RASSF3Q86WH2 238 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 ELMOD1Q8N336 334 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 OR52K1Q8NGK4 314 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 RAB3IL1Q8TBN0 382 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 LRRN4Q8WUT4 740 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 CERS2Q96G23 380 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 B3GALT6Q96L58 329 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 TSNARE1Q96NA8 513 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 ELAC2Q9BQ52 826 aaKnown RBP11.34□□□□□ -0.59
SKA2-204ENST00000578519 WDR83Q9BRX9 315 aaKnown RBP11.34□□□□□ -0.59
SKA2-204ENST00000578519 MAGEH1Q9H213 219 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 RABEP2Q9H5N1 569 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 KLHL14Q9P2G3 628 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 DCDC2Q9UHG0 476 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 GRID1Q9ULK0 1009 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 SOX13Q9UN79 622 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 USP15Q9Y4E8 981 aaPredicted RBP11.34□□□□□ -0.59
SKA2-204ENST00000578519 TTC3P53804 2025 aa11.34□□□□□ -0.59
SKA2-204ENST00000578519 PATJQ8NI35 1801 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 ZNF840PA6NDX5 716 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 TIMM44O43615 452 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 CLDN11O75508 207 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 HMBSP08397 361 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 PYGBP11216 843 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 CREB1P16220 341 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 PFKLP17858 780 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 OR1E1P30953 314 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 CD68P34810 354 aaPredicted RBP11.33□□□□□ -0.6
SKA2-204ENST00000578519 RPA3P35244 121 aaPredicted RBP11.33□□□□□ -0.6
SKA2-204ENST00000578519 PBX3P40426 434 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 TNK2Q07912 1038 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 ITKQ08881 620 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 ZBTB17Q13105 803 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 RFTN1Q14699 578 aaPredicted RBP11.33□□□□□ -0.6
SKA2-204ENST00000578519 EFTUD2Q15029 972 aaKnown RBP eCLIP11.33□□□□□ -0.68e-12■■■■□ 22.2
SKA2-204ENST00000578519 INSCQ1MX18 579 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 C5orf22Q49AR2 442 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 ANKRD20A4Q4UJ75 823 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 RSPO2Q6UXX9 243 aaPredicted RBP11.33□□□□□ -0.6
SKA2-204ENST00000578519 CCDC149Q6ZUS6 474 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 C14orf80Q86SX3 495 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 PRPF39Q86UA1 669 aaKnown RBP11.33□□□□□ -0.6
SKA2-204ENST00000578519 TMEM135Q86UB9 458 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 TCEAL8Q8IYN2 117 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 LGI2Q8N0V4 545 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 FIBCD1Q8N539 461 aa11.33□□□□□ -0.6
SKA2-204ENST00000578519 TTC9BQ8N6N2 239 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms