RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 KDM3AQ9Y4C1 1321 aa6.15□□□□□ -1.43
VPS53-219ENST00000576019 LAMA5O15230 3695 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 ANKRD36CQ5JPF3 1778 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 ECM29Q5VYK3 1845 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 EPOPA6NHQ4 379 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 SLC38A8A6NNN8 435 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 DNM1LO00429 736 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 RTCAO00442 366 aaKnown RBP6.14□□□□□ -1.43
VPS53-219ENST00000576019 HNRNPRO43390 633 aaKnown RBP6.14□□□□□ -1.43
VPS53-219ENST00000576019 TNFSF14O43557 240 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 IGLV1-40P01703 118 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 KRT1P04264 644 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 ICAM3P32942 547 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 PSMB10P40306 273 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 MC3RP41968 323 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 MSH2P43246 934 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 LILRA4P59901 499 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 SHC2P98077 582 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 AIMP1Q12904 312 aaKnown RBP6.14□□□□□ -1.43
VPS53-219ENST00000576019 MYO1EQ12965 1108 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 IQCB1Q15051 598 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 KYNUQ16719 465 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 PTCHD3Q3KNS1 767 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 MMEL1Q495T6 779 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 DEPDC1Q5TB30 811 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 ZNF574Q6ZN55 896 aaPredicted RBP6.14□□□□□ -1.43
VPS53-219ENST00000576019 GPR149Q86SP6 731 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 CD163Q86VB7 1156 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 NUP93Q8N1F7 819 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 OR8H1Q8NGG4 311 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 ABHD5Q8WTS1 349 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 MISP3Q96FF7 219 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 CLIC6Q96NY7 704 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 MOGAT1Q96PD6 335 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 FNBP1Q96RU3 617 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 MYCBPQ99417 103 aaPredicted RBP6.14□□□□□ -1.43
VPS53-219ENST00000576019 MAK16Q9BXY0 300 aaKnown RBP6.14□□□□□ -1.43
VPS53-219ENST00000576019 SEMA4BQ9NPR2 832 aaPredicted RBP6.14□□□□□ -1.43
VPS53-219ENST00000576019 C19orf73Q9NVV2 129 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 DNAJB11Q9UBS4 358 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 RASAL2Q9UJF2 1139 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 GTF3C4Q9UKN8 822 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 TMCC3Q9ULS5 477 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 HDAC5Q9UQL6 1122 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 HEG1Q9ULI3 1381 aa6.14□□□□□ -1.43
VPS53-219ENST00000576019 FBN2P35556 2912 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 BTBD11A6QL63 1104 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 C1QTNF9BB2RNN3 333 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 SEPT4O43236 478 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 HEXIM1O94992 359 aaKnown RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 LARGE1O95461 756 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 KNG1P01042 644 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 CYP2C8P10632 490 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 ALAS1P13196 640 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 FGFR4P22455 802 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 ATP5DP30049 168 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 CD6P30203 668 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 CHRNA4P43681 627 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 ITGA1P56199 1179 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 RIPPLY3P57055 190 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 ZXDAP98168 799 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 PPIL2Q13356 520 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 SMC1AQ14683 1233 aaKnown RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 COG2Q14746 738 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 CBWD5Q5RIA9 395 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 MSANTD2Q6P1R3 559 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 LARP4Q71RC2 724 aaKnown RBP eCLIP6.13□□□□□ -1.43
VPS53-219ENST00000576019 ERO1BQ86YB8 467 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 LMNTD2Q8IXW0 634 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 LILRA2Q8N149 483 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 GABPB2Q8TAK5 448 aaPredicted RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 TBC1D15Q8TC07 691 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 NEK9Q8TD19 979 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 RUFY2Q8WXA3 655 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 PKNOX2Q96KN3 472 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 LENG8Q96PV6 779 aaPredicted RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 NR1H4Q96RI1 486 aaPredicted RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 C2orf40Q9H1Z8 148 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 SMARCAD1Q9H4L7 1026 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 TLR8Q9NR97 1041 aaKnown RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 DECR2Q9NUI1 292 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 TAB2Q9NYJ8 693 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 KLHL14Q9P2G3 628 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 MORF4L1Q9UBU8 362 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 VPS51Q9UID3 782 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 NFU1Q9UMS0 254 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 USP22Q9UPT9 525 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 SHOC2Q9UQ13 582 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 MRPS17Q9Y2R5 130 aaKnown RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 KCNE2Q9Y6J6 123 aa6.13□□□□□ -1.43
VPS53-219ENST00000576019 UBR5O95071 2799 aaPredicted RBP6.13□□□□□ -1.43
VPS53-219ENST00000576019 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 M0QYT0 321 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 NRP1O14786 923 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 SYN3O14994 580 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 PLXNB2O15031 1838 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 HTATSF1O43719 755 aaKnown RBP6.12□□□□□ -1.43
VPS53-219ENST00000576019 LPXNO60711 386 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 ENTPD3O75355 529 aa6.12□□□□□ -1.43
VPS53-219ENST00000576019 TULP3O75386 442 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms