RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SLC10A4Q96EP9 437 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 SLC39A13Q96H72 371 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 ZNF641Q96N77 438 aaPredicted RBP11.04□□□□□ -0.64
CLK3-226ENST00000569406 MXRA8Q9BRK3 442 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 C1orf50Q9BV19 199 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 AGPAT3Q9NRZ7 376 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 KCNH7Q9NS40 1196 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLK3-226ENST00000569406 B3GNT3Q9Y2A9 372 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 PAPPA2Q9BXP8 1791 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 IGSF9BQ9UPX0 1349 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 SPOPO43791 374 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 RRM2P31350 389 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 IDUAP35475 653 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 NPTX2P47972 431 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 KCNJ1P48048 391 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 ALDH18A1P54886 795 aaKnown RBP11.04□□□□□ -0.64
CLK3-226ENST00000569406 OCA2Q04671 838 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 ZBED5Q49AG3 693 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 RALGPS1Q5JS13 557 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 FKBP9P1Q75LS8 142 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 PQLC1Q8N2U9 271 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 OR10Z1Q8NGY1 313 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 ZNF398Q8TD17 642 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 LXNQ9BS40 222 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 RHOBTB2Q9BYZ6 727 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 CHST12Q9NRB3 414 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 CYB5R1Q9UHQ9 305 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 PADI4Q9UM07 663 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 HCN4Q9Y3Q4 1203 aa11.04□□□□□ -0.64
CLK3-226ENST00000569406 CAPN14A8MX76 684 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 DAB1O75553 588 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 DNAJB5O75953 348 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 STAT1P42224 750 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 IL1RL1Q01638 556 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 OGFRL1Q5TC84 451 aaPredicted RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 PGM2L1Q6PCE3 622 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 DNAH12Q6ZR08 3092 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 HERC6Q8IVU3 1022 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 RTKN2Q8IZC4 609 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ADGRG5Q8IZF4 528 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 SIX6OS1Q8N1H7 587 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 RASGEF1CQ8N431 466 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 GOT1L1Q8NHS2 421 aaPredicted RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 ST8SIA2Q92186 375 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 TANKQ92844 425 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 MARC2Q969Z3 335 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 WDR90Q96KV7 1748 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 GCOM2Q9BZD3 368 aaPredicted RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 TRIM15Q9C019 465 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 DCLK3Q9C098 648 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 TOR3AQ9H497 397 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 RMND5AQ9H871 391 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 GMEB2Q9UKD1 530 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 UBIAD1Q9Y5Z9 338 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 FAM237BA0A1B0GVD1 139 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ARHGEF37A1IGU5 675 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 DYNC1LI2O43237 492 aaPredicted RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 JRKO75564 520 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 NPPAP01160 153 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 CLEC2LP0C7M8 214 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 POU2F1P14859 743 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 RAD23AP54725 363 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 HSD17B7P56937 341 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ZMYND11Q15326 602 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 METTL11BQ5VVY1 283 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 AADACL2Q6P093 401 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ZNF704Q6ZNC4 412 aaPredicted RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 LYSMD3Q7Z3D4 306 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ADAMTSL2Q86TH1 951 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 AGBL3Q8NEM8 1001 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 TPCN2Q8NHX9 752 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 C9orf72Q96LT7 481 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 PWWP2AQ96N64 755 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ZNF577Q9BSK1 485 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 WACQ9BTA9 647 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 TSSK1BQ9BXA7 367 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 C12orf65Q9H3J6 166 aaKnown RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 ASIC3Q9UHC3 531 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 TAGLN3Q9UI15 199 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 FEM1BQ9UK73 627 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 PACSIN3Q9UKS6 424 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 MKL2Q9ULH7 1088 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ZNRF3Q9ULT6 936 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 PLA2G4CQ9UP65 541 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 SMG5Q9UPR3 1016 aaKnown RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 F8W810 466 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 TTC4O95801 387 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ADRA1DP25100 572 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ETV1P50549 477 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 DBPQ10586 325 aaPredicted RBP11.03□□□□□ -0.64
CLK3-226ENST00000569406 TP53INP1Q96A56 240 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 RILPQ96NA2 401 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 C1QTNF7Q9BXJ2 289 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 KCNN2Q9H2S1 579 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 GCNT4Q9P109 453 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 ATP8B3O60423 1300 aa11.03□□□□□ -0.64
CLK3-226ENST00000569406 DYRK3O43781 588 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 FAM13AO94988 1023 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 DLGAP3O95886 979 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms