RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PLK2Q9NYY3 685 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 FAM153AQ9UHL3 310 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 CDH7Q9ULB5 785 aa31.25■■■□□ 2.59
CTCF-203ENST00000566078 NUMBP49757 651 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 IFI35P80217 286 aaPredicted RBP31.24■■■□□ 2.59
CTCF-203ENST00000566078 MPP7Q5T2T1 576 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 FAXCQ5TGI0 409 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 EMBQ6PCB8 327 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 MFN1Q8IWA4 741 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 CPT1BQ92523 772 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 PABPC5Q96DU9 382 aaKnown RBP31.24■■■□□ 2.59
CTCF-203ENST00000566078 LRRC3BQ96PB8 259 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 MTRF1LQ9UGC7 380 aaKnown RBP31.24■■■□□ 2.59
CTCF-203ENST00000566078 FARP1Q9Y4F1 1045 aaPredicted RBP31.24■■■□□ 2.59
CTCF-203ENST00000566078 J3KR12 359 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 METTL18O95568 372 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 JCHAINP01591 159 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 CCNB1P14635 433 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 COL19A1Q14993 1142 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 MORF4L2Q15014 288 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 RNF219Q5W0B1 726 aaPredicted RBP31.24■■■□□ 2.59
CTCF-203ENST00000566078 RHBDF2Q6PJF5 856 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 PPIL6Q8IXY8 311 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 WFDC5Q8TCV5 224 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 OTUB2Q96DC9 234 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 MSLNLQ96KJ4 702 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 GDAP1L1Q96MZ0 367 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 VAT1Q99536 393 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 LINC00597Q9H2U6 94 aa31.24■■■□□ 2.59
CTCF-203ENST00000566078 MIA3Q5JRA6 1907 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 SLC9A3R1O14745 358 aaPredicted RBP31.23■■■□□ 2.59
CTCF-203ENST00000566078 ANO4Q32M45 955 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 TEX44Q53QW1 395 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 FSCBQ5H9T9 825 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 BEND6Q5SZJ8 279 aaPredicted RBP31.23■■■□□ 2.59
CTCF-203ENST00000566078 FYB2Q5VWT5 728 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 IL31Q6EBC2 164 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 PID1Q7Z2X4 250 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 AGAP3Q96P47 875 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 MUC3BQ9H195 1237 aa31.23■■■□□ 2.59
CTCF-203ENST00000566078 F5H423 210 aaPredicted RBP31.22■■■□□ 2.59
CTCF-203ENST00000566078 MTHFRP42898 656 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 IL10RBQ08334 325 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 ZNF783Q6ZMS7 281 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 TMEM25Q86YD3 366 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 CCDC117Q8IWD4 279 aaPredicted RBP31.22■■■□□ 2.59
CTCF-203ENST00000566078 MAML1Q92585 1016 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 IL12RB2Q99665 862 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 SPON2Q9BUD6 331 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 ETNK1Q9HBU6 452 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 ATP13A1Q9HD20 1204 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 TRHDEQ9UKU6 1024 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 SHOC2Q9UQ13 582 aa31.22■■■□□ 2.59
CTCF-203ENST00000566078 TNNT3P45378 269 aaPredicted RBP31.21■■■□□ 2.59
CTCF-203ENST00000566078 ANKRD22Q5VYY1 191 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 BPIFB1Q8TDL5 484 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 PRCCQ92733 491 aaPredicted RBP31.21■■■□□ 2.59
CTCF-203ENST00000566078 IRF7Q92985 503 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 FATE1Q969F0 183 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 CAVIN3Q969G5 261 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 MYADMQ96S97 322 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 TRPV4Q9HBA0 871 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 SPHK2Q9NRA0 654 aa31.21■■■□□ 2.59
CTCF-203ENST00000566078 DUS2Q9NX74 493 aaKnown RBP31.21■■■□□ 2.59
CTCF-203ENST00000566078 ZBTB24O43167 697 aaPredicted RBP31.2■■■□□ 2.59
CTCF-203ENST00000566078 PRAMEF11O60813 436 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 PEX11BO96011 259 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 FCARP24071 287 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 PSMB4P28070 264 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 FDFT1P37268 417 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 ETFBP38117 255 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 OXCT1P55809 520 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 KCNJ11Q14654 390 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 PRPF38BQ5VTL8 546 aaKnown RBP31.2■■■□□ 2.59
CTCF-203ENST00000566078 RNF43Q68DV7 783 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 HOOK3Q86VS8 718 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 KIAA1958Q8N8K9 716 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 NAT8LQ8N9F0 302 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 TEKT5Q96M29 485 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 RSPH14Q9UHP6 348 aa31.2■■■□□ 2.59
CTCF-203ENST00000566078 NEDD8-MDP1E9PL57 170 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 GBP2P32456 591 aaPredicted RBP31.2■■■□□ 2.58
CTCF-203ENST00000566078 SYCP2LQ5T4T6 812 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 ITPRIPL1Q6GPH6 555 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 ST13P5Q8NFI4 369 aaPredicted RBP31.2■■■□□ 2.58
CTCF-203ENST00000566078 NSMCE1Q8WV22 266 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 OSCP1Q8WVF1 389 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 ZNF419Q96HQ0 510 aaPredicted RBP31.2■■■□□ 2.58
CTCF-203ENST00000566078 BBS2Q9BXC9 721 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 POMKQ9H5K3 350 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 OBP2AQ9NY56 170 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 IGSF9Q9P2J2 1179 aa31.2■■■□□ 2.58
CTCF-203ENST00000566078 TCRBV7S3A2A0A539 114 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 HEPACAM2A8MVW5 462 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 CHADO15335 359 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 NEBLO76041 1014 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 TMEM63AO94886 807 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 MZF1P28698 734 aaPredicted RBP31.19■■■□□ 2.58
CTCF-203ENST00000566078 CSKP41240 450 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 IFNAR2P48551 515 aa31.19■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms