RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FARP1Q9Y4F1 1045 aaPredicted RBP19.23■□□□□ 0.67
CLN3-218ENST00000565688 PLRG1O43660 514 aaKnown RBP19.22■□□□□ 0.67
CLN3-218ENST00000565688 MAGEC1O60732 1142 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 ADCY5O95622 1261 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 ITGAVP06756 1048 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 CYP11B1P15538 503 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 GABRB2P47870 512 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 SULT1E1P49888 294 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 NXPH1P58417 271 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 RNASE9P60153 205 aaKnown RBP19.22■□□□□ 0.67
CLN3-218ENST00000565688 PPP2CBP62714 309 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 PPP2CAP67775 309 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 DRAP1Q14919 205 aaPredicted RBP19.22■□□□□ 0.67
CLN3-218ENST00000565688 DPCR1Q3MIW9 517 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 MIIPQ5JXC2 388 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 OTUD1Q5VV17 481 aaPredicted RBP19.22■□□□□ 0.67
CLN3-218ENST00000565688 LRRC31Q6UY01 552 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 Q6ZVU0 165 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 C14orf80Q86SX3 495 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 SETD3Q86TU7 594 aaPredicted RBP19.22■□□□□ 0.67
CLN3-218ENST00000565688 IQCHQ86VS3 1027 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 TRIM69Q86WT6 500 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 MFSD2AQ8NA29 543 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 MSANTD4Q8NCY6 345 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 C1orf74Q96LT6 269 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 CCDC114Q96M63 670 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 SARDHQ9UL12 918 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 PTPRBP23467 1997 aa19.22■□□□□ 0.67
CLN3-218ENST00000565688 PLXNB3Q9ULL4 1909 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 PES1O00541 588 aaKnown RBP19.21■□□□□ 0.67
CLN3-218ENST00000565688 WNT9AO14904 365 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 RTN2O75298 545 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 LSM8O95777 96 aaKnown RBP19.21■□□□□ 0.67
CLN3-218ENST00000565688 CDK4P11802 303 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 GGCXP38435 758 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 DEUP1Q05D60 604 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 CCDC15Q0P6D6 951 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 CNTN1Q12860 1018 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 OVGP1Q12889 678 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 SMAD1Q15797 465 aaKnown RBP19.21■□□□□ 0.67
CLN3-218ENST00000565688 SLC25A52Q3SY17 297 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 FAM102AQ5T9C2 384 aaPredicted RBP19.21■□□□□ 0.67
CLN3-218ENST00000565688 KLHDC7AQ5VTJ3 777 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 AGBL4Q5VU57 503 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 DPY19L2P1Q6NXN4 242 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 ERICH1Q86X53 443 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 PIP4K2CQ8TBX8 421 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 SAP25Q8TEE9 199 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 ARHGAP20Q9P2F6 1191 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 DKK4Q9UBT3 224 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 LHX6Q9UPM6 363 aa19.21■□□□□ 0.67
CLN3-218ENST00000565688 COL5A1P20908 1838 aaPredicted RBP19.21■□□□□ 0.67
CLN3-218ENST00000565688 DRGXA6NNA5 263 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 CNTN5O94779 1100 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 RHOCP08134 193 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 RXRGP48443 463 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 CLCN6P51797 869 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 METAP1P53582 386 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 SHBQ15464 509 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 SETMARQ53H47 684 aaPredicted RBP19.2■□□□□ 0.66
CLN3-218ENST00000565688 CT47A1Q5JQC4 288 aaPredicted RBP19.2■□□□□ 0.66
CLN3-218ENST00000565688 PRAMEF14Q5SWL7 426 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 C6orf118Q5T5N4 469 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 GATAD2AQ86YP4 633 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 ATP11CQ8NB49 1132 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 PREBQ9HCU5 417 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 PCDHGA1Q9Y5H4 931 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 FHOD1Q9Y613 1164 aa19.2■□□□□ 0.66
CLN3-218ENST00000565688 PLK4O00444 970 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 ENC1O14682 589 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 BNIP3LO60238 219 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 LDOC1O95751 146 aaPredicted RBP19.19■□□□□ 0.66
CLN3-218ENST00000565688 C1SP09871 688 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 SRCP12931 536 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 UCHL3P15374 230 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 TFE3P19532 575 aaPredicted RBP19.19■□□□□ 0.66
CLN3-218ENST00000565688 EPHA8P29322 1005 aaPredicted RBP19.19■□□□□ 0.66
CLN3-218ENST00000565688 MAT2AP31153 395 aaKnown RBP19.19■□□□□ 0.66
CLN3-218ENST00000565688 KCNMA1Q12791 1236 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 STAT4Q14765 748 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 ALFQ53S48 1182 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 CCDC157Q569K6 752 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 HSP90AA4PQ58FG1 418 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 XYLT1Q86Y38 959 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 ZNF683Q8IZ20 524 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 DCAF4L2Q8NA75 395 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 CNDP2Q96KP4 475 aaKnown RBP19.19■□□□□ 0.66
CLN3-218ENST00000565688 TBCBQ99426 244 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 NAA15Q9BXJ9 866 aaKnown RBP19.19■□□□□ 0.66
CLN3-218ENST00000565688 ANLNQ9NQW6 1124 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 VPS51Q9UID3 782 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 CACNA1GO43497 2377 aa19.19■□□□□ 0.66
CLN3-218ENST00000565688 TP53BP1Q12888 1972 aaPredicted RBP19.19■□□□□ 0.66
CLN3-218ENST00000565688 ACACAQ13085 2346 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 IGLV3-10A0A075B6K4 115 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 PRAMEF26H0Y7S4 382 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 RNGTTO60942 597 aaKnown RBP19.18■□□□□ 0.66
CLN3-218ENST00000565688 MT-CO1P00395 513 aa19.18■□□□□ 0.66
CLN3-218ENST00000565688 EEF1GP26641 437 aaKnown RBP19.18■□□□□ 0.66
CLN3-218ENST00000565688 POM121L1PQ3SYA9 428 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms