RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SCNN1AP37088 669 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 GABRB2P47870 512 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 CNTN1Q12860 1018 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 SLC45A4Q5BKX6 768 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 MIIPQ5JXC2 388 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 AGBL4Q5VU57 503 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 PRPF39Q86UA1 669 aaKnown RBP17.58■□□□□ 0.4
CLN3-216ENST00000565316 IQCHQ86VS3 1027 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 TRIM69Q86WT6 500 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 MARCH9Q86YJ5 346 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 GATAD2AQ86YP4 633 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 MFSD2AQ8NA29 543 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 NDST4Q9H3R1 872 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 SYNCQ9H7C4 482 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 PLCB1Q9NQ66 1216 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 TMEM51Q9NW97 253 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.58■□□□□ 0.4
CLN3-216ENST00000565316 DMTF1Q9Y222 760 aa17.58■□□□□ 0.4
CLN3-216ENST00000565316 GOLGA4Q13439 2230 aaKnown RBP17.58■□□□□ 0.4
CLN3-216ENST00000565316 CELSR3Q9NYQ7 3312 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 DRGXA6NNA5 263 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 CNTN5O94779 1100 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 ITGAVP06756 1048 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 C1SP09871 688 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 TFE3P19532 575 aaPredicted RBP17.57■□□□□ 0.4
CLN3-216ENST00000565316 EPHA8P29322 1005 aaPredicted RBP17.57■□□□□ 0.4
CLN3-216ENST00000565316 GGCXP38435 758 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 ARRB1P49407 418 aaPredicted RBP17.57■□□□□ 0.4
CLN3-216ENST00000565316 OVGP1Q12889 678 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 ACCSLQ4AC99 568 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 VWA3BQ502W6 1294 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 ARTNQ5T4W7 220 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 Q6ZVU0 165 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 SPATS2Q86XZ4 545 aaKnown RBP17.57■□□□□ 0.4
CLN3-216ENST00000565316 FAM114A1Q8IWE2 563 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 TMEM35BQ8NCS4 154 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 PIP4K2CQ8TBX8 421 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 C1orf74Q96LT6 269 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 PSMB7Q99436 277 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 TKTL2Q9H0I9 626 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 SIK2Q9H0K1 926 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 WDCPQ9H6R7 721 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 BAHCC1Q9P281 2608 aa17.57■□□□□ 0.4
CLN3-216ENST00000565316 KNTC1P50748 2209 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 TRABD2BA6NFA1 517 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 E9PAM4 449 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 C1QTNF3-AMACRE9PGA6 284 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 ENC1O14682 589 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 LDOC1O95751 146 aaPredicted RBP17.56■□□□□ 0.4
CLN3-216ENST00000565316 MT-CO1P00395 513 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 F9P00740 461 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 CDK4P11802 303 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 SRCP12931 536 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 PRKCSHP14314 528 aaPredicted RBP17.56■□□□□ 0.4
CLN3-216ENST00000565316 CYP11B1P15538 503 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 TPD52L1Q16890 204 aaPredicted RBP17.56■□□□□ 0.4
CLN3-216ENST00000565316 ALFQ53S48 1182 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 ACBD5Q5T8D3 534 aaPredicted RBP17.56■□□□□ 0.4
CLN3-216ENST00000565316 DHRS13Q6UX07 377 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 KANSL1Q7Z3B3 1105 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 TMPRSS12Q86WS5 348 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 OXR1Q8N573 874 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 PDCD7Q8N8D1 485 aaKnown RBP17.56■□□□□ 0.4
CLN3-216ENST00000565316 TSC1Q92574 1164 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 CNDP2Q96KP4 475 aaKnown RBP17.56■□□□□ 0.4
CLN3-216ENST00000565316 TUBGCP2Q9BSJ2 902 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 NAA15Q9BXJ9 866 aaKnown RBP17.56■□□□□ 0.4
CLN3-216ENST00000565316 MUC3BQ9H195 1237 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 CLSTN2Q9H4D0 955 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 STAP1Q9ULZ2 295 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 RAXQ9Y2V3 346 aa17.56■□□□□ 0.4
CLN3-216ENST00000565316 IGLV3-10A0A075B6K4 115 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 FAM149AA5PLN7 773 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 HOXB3P14651 431 aaPredicted RBP17.55■□□□□ 0.4
CLN3-216ENST00000565316 ERCC5P28715 1186 aaPredicted RBP17.55■□□□□ 0.4
CLN3-216ENST00000565316 TAS2R38P59533 333 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 KRT83P78385 493 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 KCNMA1Q12791 1236 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 DRAP1Q14919 205 aaPredicted RBP17.55■□□□□ 0.4
CLN3-216ENST00000565316 SLC25A52Q3SY17 297 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 PIP5KL1Q5T9C9 394 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 KLHDC7AQ5VTJ3 777 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 SFMBT2Q5VUG0 894 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 BNIPLQ7Z465 357 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 SETD3Q86TU7 594 aaPredicted RBP17.55■□□□□ 0.4
CLN3-216ENST00000565316 XYLT1Q86Y38 959 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 TMIEQ8NEW7 156 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 C18orf8Q96DM3 657 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 C2orf49Q9BVC5 232 aaPredicted RBP17.55■□□□□ 0.4
CLN3-216ENST00000565316 PREBQ9HCU5 417 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 VPS51Q9UID3 782 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 PAXBP1Q9Y5B6 917 aa17.55■□□□□ 0.4
CLN3-216ENST00000565316 FASNP49327 2511 aaKnown RBP17.55■□□□□ 0.4
CLN3-216ENST00000565316 TP53BP1Q12888 1972 aaPredicted RBP17.54■□□□□ 0.4
CLN3-216ENST00000565316 CBX4O00257 560 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 SNAP91O60641 907 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 MAGEC1O60732 1142 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 LSM8O95777 96 aaKnown RBP17.54■□□□□ 0.4
CLN3-216ENST00000565316 CTSLP07711 333 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 RHOCP08134 193 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms