RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GJB3O75712 270 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 EPHB2P29323 1055 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 P2RY2P41231 377 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 DGKEP52429 567 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 RPS14P62263 151 aaKnown RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 CCZ1BP86790 482 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 CCZ1P86791 482 aaPredicted RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 ADCY2Q08462 1091 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 DPYSL3Q14195 570 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PIGHQ14442 188 aaPredicted RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 HNRNPA1L2Q32P51 320 aaKnown RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 ARL13BQ3SXY8 428 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 FNDC3BQ53EP0 1204 aaKnown RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 EFHC2Q5JST6 749 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 RFX8Q6ZV50 586 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 VPS36Q86VN1 386 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 TMPRSS6Q8IU80 811 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 STK40Q8N2I9 435 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 SH2D3CQ8N5H7 860 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 CAMKK1Q8N5S9 505 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 DEFB119Q8N690 84 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PQLC3Q8N755 202 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 RTL3Q8N8U3 475 aaKnown RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 CHST14Q8NCH0 376 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PCDH19Q8TAB3 1148 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 CTNNBL1Q8WYA6 563 aaPredicted RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 RFFLQ8WZ73 363 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 HSPH1Q92598 858 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 CSPG4P5Q96PW8 444 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PRRX2Q99811 253 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 BAG1Q99933 345 aaPredicted RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 DUSP15Q9H1R2 295 aaPredicted RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 EPC1Q9H2F5 836 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PDFQ9HBH1 243 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 USP36Q9P275 1121 aaKnown RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 IMPACTQ9P2X3 320 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 UVRAGQ9P2Y5 699 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 IP6K2Q9UHH9 426 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 FCF1Q9Y324 198 aaKnown RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 PCDHGA2Q9Y5H1 932 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 RALGAPA1Q6GYQ0 2036 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 PTPRZ1P23471 2315 aaPredicted RBP9.44□□□□□ -0.9
VPS35-206ENST00000565228 CACNA1BQ00975 2339 aa9.44□□□□□ -0.9
VPS35-206ENST00000565228 KNL1Q8NG31 2342 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 ANKRD36A6QL64 1941 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 RASA4BC9J798 803 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 J3KR12 359 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 MYO1FO00160 1098 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 MUSKO15146 869 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 RASA4O43374 803 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 BUB1O43683 1085 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 PRPSAP2O60256 369 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 PEX11BO96011 259 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 SRPRAP08240 638 aaKnown RBP9.43□□□□□ -0.9
VPS35-206ENST00000565228 TPM1P09493 284 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 COMTP21964 271 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 GKP32189 559 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 GJC1P36383 396 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 ARHGAP25P42331 645 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 RGRP47804 291 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 VASPP50552 380 aaPredicted RBP9.43□□□□□ -0.9
VPS35-206ENST00000565228 SLC10A2Q12908 348 aaPredicted RBP9.43□□□□□ -0.9
VPS35-206ENST00000565228 SLC12A1Q13621 1099 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 IHHQ14623 411 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 DLG2Q15700 870 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 PLK5Q496M5 336 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 PPP6R3Q5H9R7 873 aaPredicted RBP9.43□□□□□ -0.9
VPS35-206ENST00000565228 SERPINA13PQ6UXR4 307 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 LRRC31Q6UY01 552 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 Q6ZVU0 165 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 TMTC1Q8IUR5 882 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 CCDC170Q8IYT3 715 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 UMODL1-AS1Q8N2C9 162 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 AADATQ8N5Z0 425 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 DCAF4L2Q8NA75 395 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 OR2A12Q8NGT7 310 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 GAB3Q8WWW8 586 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 KRT35Q92764 455 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 EXOC4Q96A65 974 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 SPON2Q9BUD6 331 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 MUC3BQ9H195 1237 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 TNKS2Q9H2K2 1166 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 KCNF1Q9H3M0 494 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 SMOC1Q9H4F8 434 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 PARD6AQ9NPB6 346 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS35-206ENST00000565228 VPS28Q9UK41 221 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 INTUQ9ULD6 942 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 CYP8B1Q9UNU6 501 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 HS3ST2Q9Y278 367 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 PAXBP1Q9Y5B6 917 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 ZNF292O60281 2723 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 ADAMTS9Q9P2N4 1935 aa9.43□□□□□ -0.9
VPS35-206ENST00000565228 ASPMQ8IZT6 3477 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 CCDC163A0A0D9SF12 145 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 TTC24A2A3L6 582 aaPredicted RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 TYW5A2RUC4 315 aaKnown RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 CBX4O00257 560 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 EEF2KO00418 725 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms