RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TFDP1Q14186 410 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 LINC00523Q86TU6 105 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 KATNAL2Q8IYT4 538 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 CACTIN-AS1Q8N1I8 211 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 ROPN1LQ96C74 230 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 ZNF577Q9BSK1 485 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 RDH8Q9NYR8 311 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 TRPM5Q9NZQ8 1165 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 NFS1Q9Y697 457 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SLC7A1P30825 629 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 MAPKAPK2P49137 400 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 PRKCEQ02156 737 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 GRM4Q14833 912 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 INTS11Q5TA45 600 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 ACAD10Q6JQN1 1059 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 PAOXQ6QHF9 649 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 CYP2R1Q6VVX0 501 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 RNFT2Q96EX2 444 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SNX18Q96RF0 628 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 FANCFQ9NPI8 374 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 CD93Q9NPY3 652 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 MAGEL2Q9UJ55 1249 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 MYOM1P52179 1685 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 ABCC3O15438 1527 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 MYH1P12882 1939 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 MYH2Q9UKX2 1941 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 MYH4Q9Y623 1939 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 A0A0U1RQJ8 604 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 CRTAPO75718 401 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 POLR2CP19387 275 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 HNRNPDQ14103 355 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 ATP6AP1LQ52LC2 224 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 LHFPL3Q86UP9 236 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 GPR180Q86V85 440 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 ELMOD1Q8N336 334 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 OLA1Q9NTK5 396 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 TESMINQ9Y4I5 508 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 HEY1Q9Y5J3 304 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 NPHP4O75161 1426 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 NFAT5O94916 1531 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 UBA6A0AVT1 1052 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 IL18RAPO95256 599 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 PLEKHA8P1O95397 391 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 GCLMP48507 274 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SMCO1Q147U7 214 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 EMC2Q15006 297 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 TMEM270Q6UE05 265 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SAMD14Q8IZD0 417 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 CAMKK1Q8N5S9 505 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 IGDCC4Q8TDY8 1250 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 IPCEF1Q8WWN9 437 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 MSANTD3Q96H12 275 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 TMEM121Q9BTD3 319 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 UBP1Q9NZI7 540 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 IFT80Q9P2H3 777 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 ZNF624Q9P2J8 865 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 TNFRSF10DQ9UBN6 386 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 GAKO14976 1311 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 PNMA6FA0A0J9YX94 578 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 TBX1O43435 398 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 RNASEH1O60930 286 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 GH1P01241 217 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 AOC1P19801 751 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 CLK3P49761 638 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 CDH6P55285 790 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 USP10Q14694 798 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 RBBP7Q16576 425 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SLC4A11Q8NBS3 891 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 CCDC32Q9BV29 185 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 IL1RL2Q9HB29 575 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SLC35C2Q9NQQ7 365 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 TMEM94Q12767 1356 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 NR5A2O00482 541 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SDC4P31431 198 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 GIT2Q14161 759 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SELPLGQ14242 412 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 USF2Q15853 346 aaPredicted RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 CACHD1Q5VU97 1274 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 FAM131AQ6UXB0 335 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 DPY19L3Q6ZPD9 716 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 HPS6Q86YV9 775 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 ZBTB8OSQ8IWT0 167 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 TMEM59LQ9UK28 342 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 PPM1HQ9ULR3 514 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 V9GYQ6 96 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 RPTORQ8N122 1335 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 IRGMA1A4Y4 181 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 OR14I1A6ND48 311 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 CHADO15335 359 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 AIREO43918 545 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SNRPB2P08579 225 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 ANGEL2Q5VTE6 544 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 ZYG11AQ6WRX3 759 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 SMG8Q8ND04 991 aaKnown RBP6.35□□□□□ -1.39
CLK3-212ENST00000563418 FIG4Q92562 907 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 PANX3Q96QZ0 392 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 GAL3ST1Q99999 423 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 DNAJC18Q9H819 358 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 NECTIN3Q9NQS3 549 aa6.35□□□□□ -1.39
CLK3-212ENST00000563418 AASSQ9UDR5 926 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms