RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CCL14Q16627 93 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 DUOXA2Q1HG44 320 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 ZBED5Q49AG3 693 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 FAAH2Q6GMR7 532 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 PALM2Q8IXS6 379 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 CCDC138Q96M89 665 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 ZNF778Q96MU6 729 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 SH3GL1Q99961 368 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 FERMT1Q9BQL6 677 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 NAA50Q9GZZ1 169 aaKnown RBP13.56□□□□□ -0.24
CLK3-206ENST00000562078 FZD8Q9H461 694 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 XAB2Q9HCS7 855 aaKnown RBP13.56□□□□□ -0.24
CLK3-206ENST00000562078 SORCS3Q9UPU3 1222 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 GUCY1B2O75343 617 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 KLHL2O95198 593 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 TMEM191BP0C7N4 346 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 CXCL8P10145 99 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 CD1EP15812 388 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 ZNF26P17031 533 aaPredicted RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 EIF3EP60228 445 aaKnown RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 ESRRGP62508 458 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 MRPS5P82675 430 aaKnown RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 WASHC5Q12768 1159 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 PPP2R5DQ14738 602 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 MOGQ16653 247 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 NDUFA5Q16718 116 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 ZNF394Q53GI3 561 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 PRAMEF19Q5SWL8 479 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 GPR107Q5VW38 600 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 KRT80Q6KB66 452 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 ANKRD26P1Q6NSI1 321 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 USP43Q70EL4 1123 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 TMEM192Q8IY95 271 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 PHTF2Q8N3S3 785 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 AFG1LQ8WV93 481 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 SPATA17Q96L03 361 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 KCNK16Q96T55 309 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 TMEM79Q9BSE2 394 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 TMEM121Q9BTD3 319 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 UNKQ9C0B0 810 aaKnown RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 NIF3L1Q9GZT8 377 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 CDT1Q9H211 546 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 PTPRHQ9HD43 1115 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 CREBZFQ9NS37 354 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 FLRT1Q9NZU1 646 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 SIRPGQ9P1W8 387 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 SHOC2Q9UQ13 582 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 SNNO75324 88 aaPredicted RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 BMP10O95393 424 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 CHEK2O96017 543 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 P4HA1P13674 534 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 SMPD1P17405 629 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 GRM5P41594 1212 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 APLP1P51693 650 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 ZNF132P52740 706 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 FCGRTP55899 365 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 TUBA4AP68366 448 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 TXNL4AP83876 142 aaKnown RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 TRPC3Q13507 836 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 CARM1Q86X55 608 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 FIBCD1Q8N539 461 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 UBR7Q8N806 425 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 ZNF784Q8NCA9 323 aaPredicted RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 OR6J1Q8NGC5 347 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 APBA2Q99767 749 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 SEMA6AQ9H2E6 1030 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 C10orf88Q9H8K7 445 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 DAPK2Q9UIK4 370 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 APOBEC2Q9Y235 224 aaKnown RBP13.55□□□□□ -0.24
CLK3-206ENST00000562078 PLLPQ9Y342 182 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 IKBKGQ9Y6K9 419 aa13.55□□□□□ -0.24
CLK3-206ENST00000562078 L1CAMP32004 1257 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 ADAM17P78536 824 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 TNFAIP2Q03169 654 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 STX3Q13277 289 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 FLOT2Q14254 428 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 ZNF699Q32M78 642 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 BBS9Q3SYG4 887 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 DUSP28Q4G0W2 176 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 ATP13A4Q4VNC1 1196 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 LIN9Q5TKA1 542 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 IGFN1Q86VF2 1251 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 BPHLQ86WA6 291 aaPredicted RBP13.54□□□□□ -0.24
CLK3-206ENST00000562078 MYO1HQ8N1T3 1032 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 TMEM130Q8N3G9 435 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 PPTC7Q8NI37 304 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 ZNF606Q8WXB4 792 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 NACC2Q96BF6 587 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 CCDC68Q9H2F9 335 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 CISHQ9NSE2 258 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 TRIP12Q14669 1992 aaPredicted RBP13.54□□□□□ -0.24
CLK3-206ENST00000562078 TRIM49D1C9J1S8 452 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 PSMD11O00231 422 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 INHBAP08476 426 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 WEE2P0C1S8 567 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 CHRNB1P11230 501 aa13.54□□□□□ -0.24
CLK3-206ENST00000562078 ZNF182P17025 639 aaPredicted RBP13.54□□□□□ -0.24
CLK3-206ENST00000562078 XRCC1P18887 633 aaPredicted RBP13.54□□□□□ -0.24
CLK3-206ENST00000562078 NCF2P19878 526 aaPredicted RBP13.54□□□□□ -0.24
CLK3-206ENST00000562078 CTGFP29279 349 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms