RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 FLNBO75369 2602 aaKnown RBP19.53■□□□□ 0.72
VPS35-202ENST00000561713 CFAP46Q8IYW2 2715 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 A0A1W2PR77 199 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 TARSL2A2RTX5 802 aaKnown RBP19.52■□□□□ 0.72
VPS35-202ENST00000561713 LRRC72A6NJI9 287 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 CNTN5O94779 1100 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 ADCY5O95622 1261 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 SLC2A3P11169 496 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 CD38P28907 300 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 EIF2S3P41091 472 aaKnown RBP19.52■□□□□ 0.72
VPS35-202ENST00000561713 ADPRHP54922 357 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 TARDBPQ13148 414 aaKnown RBP eCLIP19.52■□□□□ 0.72
VPS35-202ENST00000561713 ARID5BQ14865 1188 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 TTC39BQ5VTQ0 682 aaPredicted RBP19.52■□□□□ 0.72
VPS35-202ENST00000561713 Q6ZVU0 165 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 KDM1BQ8NB78 822 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 OR2T34Q8NGX1 318 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 PDCL3Q9H2J4 239 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 ADAMTS1Q9UHI8 967 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 RAI2Q9Y5P3 530 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 AK5Q9Y6K8 562 aa19.52■□□□□ 0.72
VPS35-202ENST00000561713 TDRD6O60522 2096 aaKnown RBP19.52■□□□□ 0.71
VPS35-202ENST00000561713 C10orf142B7Z368 130 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 GOLGA8SH3BPF8 625 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 BNIP3LO60238 219 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 C1SP09871 688 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 DRD3P35462 400 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 ACADVLP49748 655 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 KLK7P49862 253 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 ELAVL3Q14576 367 aaKnown RBP19.51■□□□□ 0.71
VPS35-202ENST00000561713 ALFQ53S48 1182 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 FAM102AQ5T9C2 384 aaPredicted RBP19.51■□□□□ 0.71
VPS35-202ENST00000561713 OR14C36Q8NHC7 312 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 FRS2Q8WU20 508 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 ALG14Q96F25 216 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 TBCBQ99426 244 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 PRORYQ9H606 182 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 GDF3Q9NR23 364 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 VPS28Q9UK41 221 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 FZD4Q9ULV1 537 aa19.51■□□□□ 0.71
VPS35-202ENST00000561713 SHROOM3Q8TF72 1996 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 SNAP91O60641 907 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 C1QL1O75973 258 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 ADH1BP00325 375 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 CYP11B1P15538 503 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 EPHA8P29322 1005 aaPredicted RBP19.5■□□□□ 0.71
VPS35-202ENST00000561713 NOS2P35228 1153 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 CCR5P51681 352 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 C19orf57Q0VDD7 668 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 SFSWAPQ12872 951 aaKnown RBP19.5■□□□□ 0.71
VPS35-202ENST00000561713 BNIP3Q12983 259 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 ACCSLQ4AC99 568 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 HES3Q5TGS1 186 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 KLHDC7AQ5VTJ3 777 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 TRNP1Q6NT89 227 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 NOP9Q86U38 636 aaKnown RBP19.5■□□□□ 0.71
VPS35-202ENST00000561713 ZNF397Q8NF99 534 aaPredicted RBP19.5■□□□□ 0.71
VPS35-202ENST00000561713 SLC39A7Q92504 469 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 TSC1Q92574 1164 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 SERAC1Q96JX3 654 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 NPY6RQ99463 290 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 TKTL2Q9H0I9 626 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 MUC3BQ9H195 1237 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 SLC25A13Q9UJS0 675 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 SARDHQ9UL12 918 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 MGAQ8IWI9 3026 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 ATMQ13315 3056 aa19.5■□□□□ 0.71
VPS35-202ENST00000561713 ARID1BQ8NFD5 2236 aaPredicted RBP19.49■□□□□ 0.71
VPS35-202ENST00000561713 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.49■□□□□ 0.71
VPS35-202ENST00000561713 F8VZ95 297 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 RTN2O75298 545 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 CDK4P11802 303 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 C5AR1P21730 350 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 ERCC5P28715 1186 aaPredicted RBP19.49■□□□□ 0.71
VPS35-202ENST00000561713 FLT3P36888 993 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 ZNF177Q13360 481 aaPredicted RBP19.49■□□□□ 0.71
VPS35-202ENST00000561713 SLC12A1Q13621 1099 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 FBXL19Q6PCT2 694 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.49■□□□□ 0.71
VPS35-202ENST00000561713 LRRC69Q6ZNQ3 347 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 SND1Q7KZF4 910 aaKnown RBP eCLIP19.49■□□□□ 0.71
VPS35-202ENST00000561713 TFAP2DQ7Z6R9 452 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 XYLT1Q86Y38 959 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 TMEM35BQ8NCS4 154 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 SLC20A1Q8WUM9 679 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 FEM1AQ9BSK4 669 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 NAA15Q9BXJ9 866 aaKnown RBP19.49■□□□□ 0.71
VPS35-202ENST00000561713 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.49■□□□□ 0.71
VPS35-202ENST00000561713 DACH1Q9UI36 760 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 OR51B4Q9Y5P0 310 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 CHD5Q8TDI0 1954 aa19.49■□□□□ 0.71
VPS35-202ENST00000561713 TLR4O00206 839 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 YKT6O15498 198 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 RHOCP08134 193 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 MMEP08473 750 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 UCHL3P15374 230 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 GOT1P17174 413 aa19.48■□□□□ 0.71
VPS35-202ENST00000561713 MAT2AP31153 395 aaKnown RBP19.48■□□□□ 0.71
VPS35-202ENST00000561713 CDH5P33151 784 aaPredicted RBP19.48■□□□□ 0.71
VPS35-202ENST00000561713 NNMTP40261 264 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms