RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 NCF1CA8MVU1 366 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 LEFTY2O00292 366 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 INPP4BO15327 924 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 LINC01565O15544 149 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 RNASEH1O60930 286 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TUBBP07437 444 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 KITP10721 976 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 NCF1P14598 390 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ATF6P18850 670 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 STIP1P31948 543 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 RPL22P35268 128 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CSKP41240 450 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ELK3P41970 407 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 STRADAQ7RTN6 431 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 LDB1Q86U70 411 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 HJURPQ8NCD3 748 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PPHLN1Q8NEY8 458 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 SREK1Q8WXA9 508 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CCT6BQ92526 530 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 RUNDC3BQ96NL0 473 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 OMDQ99983 421 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 WRAP53Q9BUR4 548 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 UBXN6Q9BZV1 441 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 SLC39A8Q9C0K1 460 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 RNF38Q9H0F5 515 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 STMN4Q9H169 189 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 FAM96AQ9H5X1 160 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF334Q9HCZ1 680 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 IARS2Q9NSE4 1012 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CACNA2D2Q9NY47 1150 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CIDEBQ9UHD4 219 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CD84Q9UIB8 345 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CA14Q9ULX7 337 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CRYL1Q9Y2S2 319 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PKP3Q9Y446 797 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 NME7Q9Y5B8 376 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ANGPTL3Q9Y5C1 460 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 SPTA1P02549 2419 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CACNA1HO95180 2353 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 AHCTF1Q8WYP5 2266 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 MYO18AQ92614 2054 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TRBV23OR9-2A0A075B6M9 112 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 FAM187AA6NFU0 413 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PFDN6O15212 129 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 RNASEH2AO75792 299 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CEBPBP17676 345 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 FGFR3P22607 806 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 MAGOHP61326 146 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TUBB4BP68371 445 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PFKPQ01813 784 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 DSG1Q02413 1049 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 SMARCB1Q12824 385 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 FOXD4Q12950 439 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 NNTQ13423 1086 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CUL1Q13616 776 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ACOX1Q15067 660 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CCNG2Q16589 344 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 FASTKD1Q53R41 847 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 FAM26DQ5JW98 314 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ALKAL1Q6UXT8 129 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 Q6ZVU0 165 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PNPLA1Q8N8W4 532 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 GLIS1Q8NBF1 620 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 HDAC11Q96DB2 347 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 STAMBPL1Q96FJ0 436 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 DCUN1D1Q96GG9 259 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 HES6Q96HZ4 224 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 VPS39Q96JC1 886 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 RILPQ96NA2 401 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TRIM56Q9BRZ2 755 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TRMT61BQ9BVS5 477 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CRISPLD2Q9H0B8 497 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PCMTD2Q9NV79 361 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 HECAQ9UBI9 543 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CCL26Q9Y258 94 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 LAMA2P24043 3122 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 NCANO14594 1321 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ATAD5Q96QE3 1844 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 HEPACAM2A8MVW5 462 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 K7ERQ8 282 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 M0QZQ0 153 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 SLC9A3R1O14745 358 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 SLC31A1O15431 190 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 DDX3YO15523 660 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 RNF40O75150 1001 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 KIAA0754O94854 1291 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 AGTP01019 485 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 MYBL2P10244 700 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TYRP14679 529 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PAMP19021 973 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 GLDCP23378 1020 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 MZF1P28698 734 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PCK1P35558 622 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CDKN2BP42772 138 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 DGKGP49619 791 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 MNX1P50219 401 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 EIF3BP55884 814 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 GNA12Q03113 381 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 USP10Q14694 798 aaKnown RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms