RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CCR5P51681 352 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 PPP2CBP62714 309 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 PPP2CAP67775 309 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 NOMO3P69849 1222 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 ATP11AP98196 1134 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 C5orf22Q49AR2 442 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 RAB6CQ53S08 254 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 LINGO4Q6UY18 593 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 CLEC17AQ6ZS10 378 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 DSG4Q86SJ6 1040 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 GLRX5Q86SX6 157 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 FAM131BQ86XD5 332 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 MARCH9Q86YJ5 346 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 GATAD2AQ86YP4 633 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 SH2D3CQ8N5H7 860 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 EMC1Q8N766 993 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 ATP11CQ8NB49 1132 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 SLC30A5Q8TAD4 765 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 PIP4K2CQ8TBX8 421 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 EPS8L1Q8TE68 723 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 ZCCHC14Q8WYQ9 949 aaKnown RBP10.49□□□□□ -0.73
LDLR-214ENST00000560628 PGAP3Q96FM1 320 aaPredicted RBP10.49□□□□□ -0.73
LDLR-214ENST00000560628 SERAC1Q96JX3 654 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 C1orf74Q96LT6 269 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 PSMB7Q99436 277 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 CDC6Q99741 560 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 SPON2Q9BUD6 331 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 RAB6CQ9H0N0 254 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 TMEM59LQ9UK28 342 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 NOCTQ9UK39 431 aaKnown RBP10.49□□□□□ -0.73
LDLR-214ENST00000560628 RALYQ9UKM9 306 aaKnown RBP10.49□□□□□ -0.73
LDLR-214ENST00000560628 PPM1HQ9ULR3 514 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 A0A1W2PR77 199 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 E9PAM4 449 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 MCF2LO15068 1137 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 SMAD6O43541 496 aaKnown RBP10.48□□□□□ -0.73
LDLR-214ENST00000560628 ENDOD1O94919 500 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 GJB6O95452 261 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 TPM2P07951 284 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 SRCP12931 536 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 GLDCP23378 1020 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 RRM1P23921 792 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 CD38P28907 300 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 OR1E1P30953 314 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 SOX5P35711 763 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 SCNN1AP37088 669 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 VASPP50552 380 aaPredicted RBP10.48□□□□□ -0.73
LDLR-214ENST00000560628 CCT8P50990 548 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 KRT83P78385 493 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 FMO1Q01740 532 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 CDR2Q01850 454 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 CNTN1Q12860 1018 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 FKBP15Q5T1M5 1219 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 CDKAL1Q5VV42 579 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 FAM46CQ5VWP2 391 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 PRPF39Q86UA1 669 aaKnown RBP10.48□□□□□ -0.73
LDLR-214ENST00000560628 MSANTD4Q8NCY6 345 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 OR7D4Q8NG98 312 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 BAHD1Q8TBE0 780 aaPredicted RBP10.48□□□□□ -0.73
LDLR-214ENST00000560628 SKA1Q96BD8 255 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 PCMTD1Q96MG8 357 aaPredicted RBP10.48□□□□□ -0.73
LDLR-214ENST00000560628 TNKS2Q9H2K2 1166 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 METTL5Q9NRN9 209 aaKnown RBP10.48□□□□□ -0.73
LDLR-214ENST00000560628 VPS51Q9UID3 782 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 PAXBP1Q9Y5B6 917 aa10.48□□□□□ -0.73
LDLR-214ENST00000560628 A0A1B0GTQ1 180 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 FAM221BA6H8Z2 402 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 TMEM8BA6NDV4 472 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 C10orf142B7Z368 130 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 C1QTNF3-AMACRE9PGA6 284 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 TLR4O00206 839 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 RNF103O00237 685 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 CBX4O00257 560 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 KPNA3O00505 521 aaPredicted RBP10.47□□□□□ -0.73
LDLR-214ENST00000560628 PCDHGA12O60330 932 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 CYP1A1P04798 512 aaPredicted RBP10.47□□□□□ -0.73
LDLR-214ENST00000560628 CTSLP07711 333 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 CHRNA3P32297 505 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 GRK6P43250 576 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 COPB1P53618 953 aaKnown RBP10.47□□□□□ -0.73
LDLR-214ENST00000560628 SCAPQ12770 1279 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 SYCP1Q15431 976 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 SHBQ15464 509 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 CDO1Q16878 200 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 C15orf59Q2T9L4 293 aaPredicted RBP10.47□□□□□ -0.73
LDLR-214ENST00000560628 ARTNQ5T4W7 220 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 SASS6Q6UVJ0 657 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 CCNI2Q6ZMN8 369 aaPredicted RBP10.47□□□□□ -0.73
LDLR-214ENST00000560628 SETD3Q86TU7 594 aaPredicted RBP10.47□□□□□ -0.73
LDLR-214ENST00000560628 DRC7Q8IY82 874 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 CHST14Q8NCH0 376 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 OR2A12Q8NGT7 310 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 JOSD2Q8TAC2 188 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 RXFP2Q8WXD0 754 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 KLK6Q92876 244 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 HAPLN3Q96S86 360 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 PCDHB18PQ96TA0 734 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 ELF4Q99607 663 aaPredicted RBP10.47□□□□□ -0.73
LDLR-214ENST00000560628 C11orf70Q9BRQ4 267 aa10.47□□□□□ -0.73
LDLR-214ENST00000560628 C2orf49Q9BVC5 232 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms