RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 OR52K1Q8NGK4 314 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 PTCD2Q8WV60 388 aaKnown RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 RILPQ96NA2 401 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 TSGA13Q96PP4 275 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 MIPEPQ99797 713 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 TKTL2Q9H0I9 626 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 UPF3AQ9H1J1 476 aaKnown RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 C1orf21Q9H246 121 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 DENND2DQ9H6A0 471 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 CATSPERBQ9H7T0 1116 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 SNX15Q9NRS6 342 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 DNAJC28Q9NX36 388 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 FNIP2Q9P278 1114 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 COPG2Q9UBF2 871 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 SOX13Q9UN79 622 aa7.42□□□□□ -1.22
VPS13C-206ENST00000558338 APOBEC2Q9Y235 224 aaKnown RBP7.42□□□□□ -1.22
VPS13C-206ENST00000558338 MYBPHLA2RUH7 354 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ARHGAP42A6NI28 874 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 F5H423 210 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 F8W8V4 182 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 KCNK1O00180 336 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ZNF623O75123 536 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ANXA9O76027 345 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ALOX15P16050 662 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 AOC1P19801 751 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 GCKP35557 465 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 SCNN1GP51170 649 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CLNS1AP54105 237 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 INHBEP58166 350 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 NKX3-2P78367 333 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CRADDP78560 199 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 MGAT3Q09327 533 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 COL19A1Q14993 1142 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 PCLAFQ15004 111 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TAF11Q15544 211 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CCDC6Q16204 474 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 GPR162Q16538 588 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ACCSLQ4AC99 568 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ANKRD20A4Q4UJ75 823 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 MFSD14CQ5VZR4 134 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 PDPK2PQ6A1A2 396 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TIGD7Q6NT04 549 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 FAM171BQ6P995 826 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 C17orf99Q6UX52 265 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 GPRIN1Q7Z2K8 1008 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 NET1Q7Z628 596 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 STRA8Q7Z7C7 330 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ALYREFQ86V81 257 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 SERINC5Q86VE9 423 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 KCNMB4Q86W47 210 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 LRRC49Q8IUZ0 686 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 MAB21L3Q8N8X9 362 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 GSTCDQ8NEC7 633 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 GABPB2Q8TAK5 448 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 RDH11Q8TC12 318 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 PPP1R13LQ8WUF5 828 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 STON2Q8WXE9 905 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 RNF34Q969K3 372 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TEKT5Q96M29 485 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 HAPLN3Q96S86 360 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TRIM56Q9BRZ2 755 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CEP41Q9BYV8 373 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ZFYVE28Q9HCC9 887 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 GEMIN8Q9NWZ8 242 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 DONSONQ9NYP3 566 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 OR12D3Q9UGF7 316 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 EMCNQ9ULC0 261 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 DNAJC16Q9Y2G8 782 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CDY1Q9Y6F8 540 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ZNF638Q14966 1978 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CASTOR2A6NHX0 329 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 FAM72CH0Y354 149 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 M0QZQ0 153 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ZBTB24O43167 697 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CACNG3O60359 315 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 LRIG2O94898 1065 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 SNUPNO95149 360 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 IGLV3-25P01717 112 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ENO1P06733 434 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ERVK-10P10266 1014 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 RALBP11234 206 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CPA3P15088 417 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 NFKB1P19838 968 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TYMPP19971 482 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CCNCP24863 283 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 HOXC13P31276 330 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 PGM1P36871 562 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 VHLP40337 213 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 HARS2P49590 506 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 KPNA2P52292 529 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 GEMP55040 296 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 HUNKP57058 714 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ABCE1P61221 599 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 RPL10AP62906 217 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ASPHQ12797 758 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ILF2Q12905 390 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 MPP3Q13368 585 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ANO4Q32M45 955 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TRMT5Q32P41 509 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 FSCBQ5H9T9 825 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms