RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 C1QAP02745 245 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 SERPINE1P05121 402 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 RPL22P35268 128 aaKnown RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 CDKN2BP42772 138 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 NUMBP49757 651 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 MGAT5BQ3V5L5 792 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 SLC39A4Q6P5W5 647 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 ISLR2Q6UXK2 745 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 KYQ8NBH2 561 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP3-206ENST00000558157 ACMSDQ8TDX5 336 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 PXYLP1Q8TE99 480 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 CNDP1Q96KN2 507 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 ZNF778Q96MU6 729 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 CBWD1Q9BRT8 395 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 BEGAINQ9BUH8 593 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 RPF2Q9H7B2 306 aaKnown RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 ZNF395Q9H8N7 513 aaPredicted RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 XPNPEP3Q9NQH7 507 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 MAN1C1Q9NR34 630 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 IPO11Q9UI26 975 aaKnown RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 ADAMTS4O75173 837 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 PIAS1O75925 651 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 STAMBPO95630 424 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 INHAP05111 366 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 EDN1P05305 212 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 KRT5P13647 590 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 TKTP29401 623 aaKnown RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 ADSLP30566 484 aaPredicted RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 KLF10Q13118 480 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 IKBKEQ14164 716 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 MXD4Q14582 209 aaPredicted RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 NR1D2Q14995 579 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 ARHGEF6Q15052 776 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 TRIM16LQ309B1 348 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 GNASQ5JWF2 1037 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 ZFYVE27Q5T4F4 411 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 IRAK1BP1Q5VVH5 260 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 LYSMD3Q7Z3D4 306 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 FIBCD1Q8N539 461 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 RNF149Q8NC42 400 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 TMC2Q8TDI7 906 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 PTCD2Q8WV60 388 aaKnown RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 CPA5Q8WXQ8 436 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 SEMA4DQ92854 862 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 TOP1MTQ969P6 601 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 PPP1R16BQ96T49 567 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 TMEM79Q9BSE2 394 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 PCIF1Q9H4Z3 704 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 MRPL40Q9NQ50 206 aaKnown RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 HACD3Q9P035 362 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 KLHL3Q9UH77 587 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 USTQ9Y2C2 406 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 PTCH2Q9Y6C5 1203 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 SCN10AQ9Y5Y9 1956 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 H3BMQ9 156 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 CYB561D2O14569 222 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 KDM1AO60341 852 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 TOM1L1O75674 476 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 ME2P23368 584 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 GJC1P36383 396 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 BMXP51813 675 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 GAD2Q05329 585 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 ATP1A4Q13733 1029 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 RFTN1Q14699 578 aaPredicted RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 OXA1LQ15070 435 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 FASTKD1Q53R41 847 aaKnown RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 OGFOD2Q6N063 350 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 POLNQ7Z5Q5 900 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 PGAM4Q8N0Y7 254 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 NDUFAF2Q8N183 169 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 SLAIN1Q8ND83 568 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 ZSWIM2Q8NEG5 633 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 STON2Q8WXE9 905 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 BHMTQ93088 406 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 ZNF512Q96ME7 567 aaPredicted RBP11.09□□□□□ -0.63
USP3-206ENST00000558157 COG8Q96MW5 612 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 TUBA1CQ9BQE3 449 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 DCUN1D5Q9BTE7 237 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 KATNAL1Q9BW62 490 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 MROQ9BYG7 248 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 SLC13A1Q9BZW2 595 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 PDZD7Q9H5P4 517 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 CXorf21Q9HAI6 301 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 SPC25Q9HBM1 224 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 RIC8BQ9NVN3 520 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 ERVK-11Q9UQG0 969 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 AKT3Q9Y243 479 aa11.09□□□□□ -0.63
USP3-206ENST00000558157 RGSL1A5PLK6 1076 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 RRN3P2A6NIE6 340 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 PI4K2BG5E9Z4 385 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 HNRNPDLO14979 420 aaKnown RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 CHADO15335 359 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 MGEA5O60502 916 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 NOL3O60936 208 aaKnown RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 ATE1O95260 518 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 VTNP04004 478 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 NAT1P18440 290 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 NCF2P19878 526 aaPredicted RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 C1QTNF8P60827 252 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms