RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 IFT81Q8WYA0 676 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 NECAB3Q96P71 396 aaPredicted RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 ERP44Q9BS26 406 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 TRMT61BQ9BVS5 477 aaKnown RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 ABCB8Q9NUT2 735 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 TMEM51Q9NW97 253 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 TBC1D14Q9P2M4 693 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 ASIC3Q9UHC3 531 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 DRG1Q9Y295 367 aaKnown RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 TBC1D30Q9Y2I9 924 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 BCLAF3A2AJT9 711 aaKnown RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 BHMG1C9JSJ3 638 aaPredicted RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 TP73O15350 636 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 GJB3O75712 270 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 CISD3P0C7P0 127 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 ADH5P11766 374 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 IVDP26440 423 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 ECHS1P30084 290 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 GJA4P35212 333 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 OPRD1P41143 372 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 ZBTB17Q13105 803 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 RUNX3Q13761 415 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 PTK6Q13882 451 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 PDK1Q15118 436 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 GLE1Q53GS7 698 aaKnown RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 DUPD1Q68J44 220 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 LINGO4Q6UY18 593 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 MFN1Q8IWA4 741 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 UMODL1-AS1Q8N2C9 162 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 GPR161Q8N6U8 529 aaKnown RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 GRK7Q8WTQ7 553 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 ARHGEF2Q92974 986 aaKnown RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 FRMD8P1Q9BZ68 369 aaPredicted RBP11.01□□□□□ -0.65
TDP1-211ENST00000555178 GDF3Q9NR23 364 aa11.01□□□□□ -0.65
TDP1-211ENST00000555178 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 TTC24A2A3L6 582 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 FAM187AA6NFU0 413 aa11□□□□□ -0.65
TDP1-211ENST00000555178 PPP1R12AO14974 1030 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 CHADO15335 359 aa11□□□□□ -0.65
TDP1-211ENST00000555178 MAFKO60675 156 aa11□□□□□ -0.65
TDP1-211ENST00000555178 RAMP2O60895 175 aa11□□□□□ -0.65
TDP1-211ENST00000555178 TULP3O75386 442 aa11□□□□□ -0.65
TDP1-211ENST00000555178 CLDN11O75508 207 aa11□□□□□ -0.65
TDP1-211ENST00000555178 CD160O95971 181 aa11□□□□□ -0.65
TDP1-211ENST00000555178 GAS8O95995 478 aa11□□□□□ -0.65
TDP1-211ENST00000555178 PEX11BO96011 259 aa11□□□□□ -0.65
TDP1-211ENST00000555178 MT-CO1P00395 513 aa11□□□□□ -0.65
TDP1-211ENST00000555178 RPL22P35268 128 aaKnown RBP11□□□□□ -0.65
TDP1-211ENST00000555178 GNA12Q03113 381 aa11□□□□□ -0.65
TDP1-211ENST00000555178 ZP2Q05996 745 aa11□□□□□ -0.65
TDP1-211ENST00000555178 PPIDQ08752 370 aaKnown RBP11□□□□□ -0.65
TDP1-211ENST00000555178 WASHC5Q12768 1159 aa11□□□□□ -0.65
TDP1-211ENST00000555178 ZNF177Q13360 481 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 XRCC4Q13426 336 aa11□□□□□ -0.65
TDP1-211ENST00000555178 FUT11Q495W5 492 aa11□□□□□ -0.65
TDP1-211ENST00000555178 HEATR6Q6AI08 1181 aaKnown RBP11□□□□□ -0.65
TDP1-211ENST00000555178 ZNF354CQ86Y25 554 aa11□□□□□ -0.65
TDP1-211ENST00000555178 CDKL3Q8IVW4 592 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 ETFBKMTQ8IXQ9 262 aa11□□□□□ -0.65
TDP1-211ENST00000555178 ATPAF2Q8N5M1 289 aa11□□□□□ -0.65
TDP1-211ENST00000555178 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11□□□□□ -0.65
TDP1-211ENST00000555178 CCDC89Q8N998 374 aa11□□□□□ -0.65
TDP1-211ENST00000555178 USP33Q8TEY7 942 aa11□□□□□ -0.65
TDP1-211ENST00000555178 HTR3CQ8WXA8 447 aa11□□□□□ -0.65
TDP1-211ENST00000555178 EZH1Q92800 747 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 NXPE3Q969Y0 559 aa11□□□□□ -0.65
TDP1-211ENST00000555178 HDAC11Q96DB2 347 aa11□□□□□ -0.65
TDP1-211ENST00000555178 FEM1AQ9BSK4 669 aa11□□□□□ -0.65
TDP1-211ENST00000555178 SPON2Q9BUD6 331 aa11□□□□□ -0.65
TDP1-211ENST00000555178 HEBP1Q9NRV9 189 aa11□□□□□ -0.65
TDP1-211ENST00000555178 GRHL1Q9NZI5 618 aa11□□□□□ -0.65
TDP1-211ENST00000555178 MARK1Q9P0L2 795 aa11□□□□□ -0.65
TDP1-211ENST00000555178 HCN2Q9UL51 889 aa11□□□□□ -0.65
TDP1-211ENST00000555178 UTP11Q9Y3A2 253 aaKnown RBP11□□□□□ -0.65
TDP1-211ENST00000555178 MUC22E2RYF6 1773 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 TARSL2A2RTX5 802 aaKnown RBP11□□□□□ -0.65
TDP1-211ENST00000555178 PRRT4C9JH25 899 aa11□□□□□ -0.65
TDP1-211ENST00000555178 K7ERQ8 282 aa11□□□□□ -0.65
TDP1-211ENST00000555178 RNF103O00237 685 aa11□□□□□ -0.65
TDP1-211ENST00000555178 RHOCP08134 193 aa11□□□□□ -0.65
TDP1-211ENST00000555178 CLCN6P51797 869 aa11□□□□□ -0.65
TDP1-211ENST00000555178 KDSRQ06136 332 aa11□□□□□ -0.65
TDP1-211ENST00000555178 GPS1Q13098 491 aa11□□□□□ -0.65
TDP1-211ENST00000555178 MTA1Q13330 715 aa11□□□□□ -0.65
TDP1-211ENST00000555178 IHHQ14623 411 aa11□□□□□ -0.65
TDP1-211ENST00000555178 POLD3Q15054 466 aaPredicted RBP11□□□□□ -0.65
TDP1-211ENST00000555178 P3H1Q32P28 736 aa11□□□□□ -0.65
TDP1-211ENST00000555178 CCDC70Q6NSX1 233 aa11□□□□□ -0.65
TDP1-211ENST00000555178 MTSS1LQ765P7 747 aa11□□□□□ -0.65
TDP1-211ENST00000555178 CHST9Q7L1S5 443 aa11□□□□□ -0.65
TDP1-211ENST00000555178 YAF2Q8IY57 180 aa11□□□□□ -0.65
TDP1-211ENST00000555178 PHTF2Q8N3S3 785 aa11□□□□□ -0.65
TDP1-211ENST00000555178 FIBINQ8TAL6 211 aa11□□□□□ -0.65
TDP1-211ENST00000555178 NSMCE3Q96MG7 304 aa11□□□□□ -0.65
TDP1-211ENST00000555178 GDAP1L1Q96MZ0 367 aa11□□□□□ -0.65
TDP1-211ENST00000555178 RUNDC3BQ96NL0 473 aa11□□□□□ -0.65
TDP1-211ENST00000555178 DDX50Q9BQ39 737 aaKnown RBP11□□□□□ -0.65
TDP1-211ENST00000555178 BRD9Q9H8M2 597 aa11□□□□□ -0.65
TDP1-211ENST00000555178 THEGQ9P2T0 379 aa11□□□□□ -0.65
TDP1-211ENST00000555178 NFU1Q9UMS0 254 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms