RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.2□□□□□ -1.58
VTI1B-202ENST00000553619 DONSONQ9NYP3 566 aa5.2□□□□□ -1.58
VTI1B-202ENST00000553619 KLHL3Q9UH77 587 aa5.2□□□□□ -1.58
VTI1B-202ENST00000553619 CHORDC1Q9UHD1 332 aaPredicted RBP5.2□□□□□ -1.58
VTI1B-202ENST00000553619 ZMYM5Q9UJ78 669 aa5.2□□□□□ -1.58
VTI1B-202ENST00000553619 MTUS1Q9ULD2 1270 aa5.2□□□□□ -1.58
VTI1B-202ENST00000553619 TTC7AQ9ULT0 858 aaPredicted RBP5.2□□□□□ -1.58
VTI1B-202ENST00000553619 USP18Q9UMW8 372 aa5.2□□□□□ -1.58
VTI1B-202ENST00000553619 MAGED2Q9UNF1 606 aaPredicted RBP5.2□□□□□ -1.58
VTI1B-202ENST00000553619 EFR3BQ9Y2G0 817 aa5.2□□□□□ -1.58
VTI1B-202ENST00000553619 TSC2P49815 1807 aa5.2□□□□□ -1.58
VTI1B-202ENST00000553619 KIAA1671Q9BY89 1806 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ZNF638Q14966 1978 aaKnown RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 GOLGA6L10A0A0M3HER8 536 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 LCHNA4D1U4 455 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 YJEFN3A6XGL0 299 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 WASH4PA8MWX3 477 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 GRXCR1A8MXD5 290 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 E7ENQ6 273 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 H0YGN5 161 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CCDC188H7C350 402 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 M0QYT0 321 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ZNF197O14709 1029 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 MDM4O15151 490 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 TGM5O43548 720 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 NCK2O43639 380 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RRP9O43818 475 aaKnown RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CEP104O60308 925 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 GRAP2O75791 330 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ZNF189O75820 626 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 TJP3O95049 919 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 SLU7O95391 586 aaKnown RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 SEC24AO95486 1093 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ESR1P03372 595 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 HNRNPA1P09651 372 aaKnown RBP eCLIP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 LINC00271P0C7V0 271 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RARGP13631 454 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ZFXP17010 805 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 KDELR1P24390 212 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 MIPP30301 263 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CDC25CP30307 473 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 HOXA9P31269 272 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RDXP35241 583 aaKnown RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 FLT3P36888 993 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ARL4AP40617 200 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 PEX5P50542 639 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 COG7P83436 770 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RBM10P98175 930 aaKnown RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ITIH3Q06033 890 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 TAF10Q12962 218 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CAMK2GQ13555 558 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CDO1Q16878 200 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 TFDP3Q5H9I0 405 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RALGPS1Q5JS13 557 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 BRMS1LQ5PSV4 323 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 HECTD3Q5T447 861 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 SNX30Q5VWJ9 437 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 PLPP4Q5VZY2 271 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RSPO2Q6UXX9 243 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 PDZD4Q76G19 769 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 DNAJB7Q7Z6W7 309 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CREG2Q8IUH2 290 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CCDC50Q8IVM0 306 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 UNC45BQ8IWX7 931 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 KATNAL2Q8IYT4 538 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 PHACTR4Q8IZ21 702 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RASGEF1CQ8N431 466 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 EMC1Q8N766 993 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ATP6V0D2Q8N8Y2 350 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 FBXO15Q8NCQ5 510 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CCDC26Q8TAB7 109 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 SCAMP5Q8TAC9 235 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 SLC7A14Q8TBB6 771 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ACTRT1Q8TDG2 376 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 GIPC2Q8TF65 315 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 FAM172AQ8WUF8 416 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 TEKT4Q8WW24 435 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 GATAD2BQ8WXI9 593 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 MRPS31Q92665 395 aaKnown RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CD101Q93033 1021 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 NT5C3BQ969T7 300 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 PSMG2Q969U7 264 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 ACSF2Q96CM8 615 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 CFAP57Q96MR6 1250 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RUNDC3BQ96NL0 473 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 SERPINB11Q96P15 392 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 NPY6RQ99463 290 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 DDX50Q9BQ39 737 aaKnown RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RHOBTB2Q9BYZ6 727 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 FRMD8P1Q9BZ68 369 aaPredicted RBP5.19□□□□□ -1.58
VTI1B-202ENST00000553619 NKX2-4Q9H2Z4 354 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 RETREG1Q9H6L5 497 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 TLE6Q9H808 572 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 L2HGDHQ9H9P8 463 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 DUSP13Q9UII6 198 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 FBXW11Q9UKB1 542 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 INSL5Q9Y5Q6 135 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 MRFAP1Q9Y605 127 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 GREB1Q4ZG55 1949 aa5.19□□□□□ -1.58
VTI1B-202ENST00000553619 PLXNA4Q9HCM2 1894 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms