RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PWWP2AQ96N64 755 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 PANX3Q96QZ0 392 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 LPIN3Q9BQK8 851 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 MRPL45Q9BRJ2 306 aaKnown RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 OXCT2Q9BYC2 517 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 USP29Q9HBJ7 922 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 APOBEC3GQ9HC16 384 aaKnown RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 ARHGEF38Q9NXL2 777 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 GTF3C4Q9UKN8 822 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 DSEQ9UL01 958 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 INSL5Q9Y5Q6 135 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 ARHGEF37A1IGU5 675 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 MYBPHLA2RUH7 354 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 B2RBV5 119 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 POC1B-GALNT4F8VUJ3 575 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 BIRC5O15392 142 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CYP26A1O43174 497 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TYROBPO43914 113 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 PGM3O95394 542 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 HNRNPA1P09651 372 aaKnown RBP eCLIP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 KRT5P13647 590 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 VARSP26640 1264 aaKnown RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 HOXA9P31269 272 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 RAP1GAPP47736 663 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 EMP3P54852 163 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 OXCT1P55809 520 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 RPL26P61254 145 aaKnown RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 GPC5P78333 572 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 XIAPP98170 497 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TWF1Q12792 350 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 PDK3Q15120 406 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 KBTBD12Q3ZCT8 623 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 C1orf146Q5VVC0 180 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 KLHDC10Q6PID8 442 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CCDC149Q6ZUS6 474 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CCDC80Q76M96 950 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ADGRG6Q86SQ4 1221 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 FAM71AQ8IYT1 594 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ALDH16A1Q8IZ83 802 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 THEM5Q8N1Q8 247 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TOP6BLQ8N6T0 577 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ITFG1Q8TB96 612 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CD101Q93033 1021 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 PRICKLE1Q96MT3 831 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 MYADMQ96S97 322 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CORO1BQ9BR76 489 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TMEM120AQ9BXJ8 343 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 IMPG2Q9BZV3 1241 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 SDCBP2Q9H190 292 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 EPHX3Q9H6B9 360 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 SMYD3Q9H7B4 428 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ACP6Q9NPH0 428 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 FBXO6Q9NRD1 293 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 LIMD1Q9UGP4 676 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 MUTYHQ9UIF7 546 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ITGB1BP2Q9UKP3 347 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF711Q9Y462 761 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 WDR87Q6ZQQ6 2873 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ZDBF2Q9HCK1 2354 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CLUHO75153 1309 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 USP34Q70CQ2 3546 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TECTAO75443 2155 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 H3BRJ5 948 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 MAGEB3O15480 346 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 AP1G1O43747 822 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TM7SF2O76062 418 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 LRG1P02750 347 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 FTLP02792 175 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ASGR2P07307 311 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 VCLP18206 1134 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 FUT4P22083 530 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 GCAP28676 217 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CCR2P41597 374 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 MAGEA4P43358 317 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 PSMC1P62191 440 aaKnown RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 NOP14P78316 857 aaKnown RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 GCNT1Q02742 428 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 CUL2Q13617 745 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF699Q32M78 642 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 MMEL1Q495T6 779 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ANKRD20A4Q4UJ75 823 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 AAGABQ6PD74 315 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ELMSAN1Q6PJG2 1045 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 SCARA5Q6ZMJ2 495 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TRIM67Q6ZTA4 783 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ENOSF1Q7L5Y1 443 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 DPH6Q7L8W6 267 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 DHDDSQ86SQ9 333 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 HS6ST3Q8IZP7 471 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 NUP93Q8N1F7 819 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TMEM86AQ8N2M4 240 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 FNDC8Q8TC99 324 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 GPR152Q8TDT2 470 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 FAM172AQ8WUF8 416 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 SHC3Q92529 594 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 MTBPQ96DY7 904 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 TCEAL4Q96EI5 215 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 PRR11Q96HE9 360 aaPredicted RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms