RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 GTSE1Q9NYZ3 720 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 PRKAG3Q9UGI9 489 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CDH9Q9ULB4 789 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ANK1P16157 1881 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TMEM88BA6NKF7 163 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TMEM233B4DJY2 109 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 DCXO43602 365 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 USP1O94782 785 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 C2P06681 752 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 RALBP11234 206 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 HNRNPLP14866 589 aaKnown RBP eCLIP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 MAP2K2P36507 400 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CD86P42081 329 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SLC1A6P48664 564 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 VASPP50552 380 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 PAPOLAP51003 745 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 KCNQ1P51787 676 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 NAGLUP54802 743 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SLC12A2P55011 1212 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 DSC2Q02487 901 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TAF10Q12962 218 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 PRPSAP1Q14558 356 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TAF11Q15544 211 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 KHDC1Q4VXA5 237 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TEX44Q53QW1 395 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ALFQ53S48 1182 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF789Q5FWF6 425 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TMEM198Q66K66 360 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 FSTL4Q6MZW2 842 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 KIAA1841Q6NSI8 718 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 BZW1Q7L1Q6 419 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TDRPQ86YL5 185 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ZDHHC17Q8IUH5 632 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ZSCAN18Q8TBC5 510 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 MICAL1Q8TDZ2 1067 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 STK32AQ8WU08 396 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 WDR60Q8WVS4 1066 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 NSL1Q96IY1 281 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CADM1Q9BY67 442 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 NUF2Q9BZD4 464 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 GPR62Q9BZJ7 368 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SENP6Q9GZR1 1112 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CCDC134Q9H6E4 229 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SP110Q9HB58 689 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 GPBP1L1Q9HC44 474 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 PLK2Q9NYY3 685 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 FAM8A1Q9UBU6 413 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 IPO11Q9UI26 975 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 DERAQ9Y315 318 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 C5orf42Q9H799 3197 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ATP6AP2A0A1C7CYW4 349 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 UBA6A0AVT1 1052 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TBKBP1A7MCY6 615 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SEPT4O43236 478 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 OPHN1O60890 802 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ATP6AP2O75787 350 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 OAS1P00973 400 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 HAPLN1P10915 354 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CPA3P15088 417 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 GM2AP17900 193 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 MPSTP25325 297 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 EPHA3P29320 983 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 FDFT1P37268 417 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 NR2C2P49116 596 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CSE1LP55060 971 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SLC10A7Q0GE19 358 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TUSC3Q13454 348 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CUL3Q13618 768 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 GALNT3Q14435 633 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 RALGPS1Q5JS13 557 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 HABP4Q5JVS0 413 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TCHHL1Q5QJ38 904 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ATG16L1Q676U5 607 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 RNF43Q68DV7 783 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF470Q6ECI4 717 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TAS1R1Q7RTX1 841 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TMEM173Q86WV6 379 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 DCBLD1Q8N8Z6 715 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 OR6K2Q8NGY2 324 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CENPIQ92674 756 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 USP13Q92995 863 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ESAMQ96AP7 390 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 GRAMD1AQ96CP6 724 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SLC7A6OSQ96CW6 309 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF512Q96ME7 567 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 MIPEPQ99797 713 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ZCWPW1Q9H0M4 648 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CCSER2Q9H7U1 834 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 LRRC40Q9H9A6 602 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CNGB3Q9NQW8 809 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ACTL7BQ9Y614 415 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 NCF1BA6NI72 391 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 NCF1CA8MVU1 366 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 DCLK1O15075 740 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 TM9SF1O15321 606 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SBF1O95248 1867 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 HLA-DQB2P05538 268 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 BPGMP07738 259 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 NCF1P14598 390 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 PGAM1P18669 254 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms