RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 HMGB1P1B2RPK0 211 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-205ENST00000550592 KCNJ18B7U540 433 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 CCNT1O60563 726 aaKnown RBP5.34□□□□□ -1.55
LIMA1-205ENST00000550592 FSHBP01225 129 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 IGLV2-14P01704 120 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 AKR1A1P14550 325 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 PRKCHP24723 683 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 TACR3P29371 465 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 HNF1BP35680 557 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 PTH2RP49190 550 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 CCT4P50991 539 aaKnown RBP5.34□□□□□ -1.55
LIMA1-205ENST00000550592 TUBA4AP68366 448 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 PRICKLE4Q2TBC4 344 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 GXYLT1Q4G148 440 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 SH2D4BQ5SQS7 431 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 DHRS13Q6UX07 377 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 ZNF813Q6ZN06 617 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 RBM44Q6ZP01 1051 aaKnown RBP5.34□□□□□ -1.55
LIMA1-205ENST00000550592 BRSK2Q8IWQ3 736 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 UEVLDQ8IX04 471 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 VPS52Q8N1B4 723 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 C2CD4CQ8TF44 421 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 TBC1D22AQ8WUA7 517 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 ZFPM2Q8WW38 1151 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 NCSTNQ92542 709 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 AGAP2Q99490 1192 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 CLSTN3Q9BQT9 956 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 TM2D2Q9BX73 214 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 PRDM13Q9H4Q3 707 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 MLXIPLQ9NP71 852 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 TMEM248Q9NWD8 314 aa5.34□□□□□ -1.55
LIMA1-205ENST00000550592 CFAP74Q9C0B2 1584 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 KIF27Q86VH2 1401 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 SCAPERQ9BY12 1400 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 JCADQ9P266 1359 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 GOLGA6L10A0A0M3HER8 536 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 LRRC3CA6NJW4 275 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 SYN3O14994 580 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 HLA-DQA2P01906 255 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 GSTM2P28161 218 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 ABCD3P28288 659 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 GJC1P36383 396 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 RPP30P78346 268 aaKnown RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 LMOD3Q0VAK6 560 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 BYSLQ13895 437 aaKnown RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 HYIQ5T013 277 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 FAM180BQ6P0A1 224 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 GJB7Q6PEY0 223 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 SLC30A9Q6PML9 568 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 DSTYKQ6XUX3 929 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 ADAD1Q96M93 576 aaKnown RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 NPLQ9BXD5 320 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 SCAND2PQ9GZW5 306 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 IKZF4Q9H2S9 585 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 MROH8Q9H579 483 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 SMC4Q9NTJ3 1288 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 IRAK4Q9NWZ3 460 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 PPP1R14DQ9NXH3 145 aa5.33□□□□□ -1.56
LIMA1-205ENST00000550592 SLC25A10Q9UBX3 287 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 COL11A2P13942 1736 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 SUPT6HQ7KZ85 1726 aaKnown RBP5.33□□□□□ -1.56
LIMA1-205ENST00000550592 C17orf100A8MU93 164 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 TBX18O95935 607 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 PLAUP00749 431 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 RPS6KB1P23443 525 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 HOXA7P31268 230 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-205ENST00000550592 MTNR1AP48039 350 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 ELLP55199 621 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-205ENST00000550592 TGFB2P61812 414 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 C10orf76Q5T2E6 689 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 VWA5B1Q5TIE3 1220 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 AADACL2Q6P093 401 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 RNF144BQ7Z419 303 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 ADGRG6Q86SQ4 1221 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 TBC1D1Q86TI0 1168 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-205ENST00000550592 ARMC8Q8IUR7 673 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 ZNF366Q8N895 744 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 FAM47BQ8NA70 645 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 C8orf58Q8NAV2 365 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 SEMA6DQ8NFY4 1073 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 RFWD2Q8NHY2 731 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 BCAS4Q8TDM0 211 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 PIGKQ92643 395 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 ELP4Q96EB1 424 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 C7orf26Q96N11 449 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.32□□□□□ -1.56
LIMA1-205ENST00000550592 EFHD1Q9BUP0 239 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 INTS2Q9H0H0 1204 aaKnown RBP5.32□□□□□ -1.56
LIMA1-205ENST00000550592 TTC12Q9H892 705 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-205ENST00000550592 BEX4Q9NWD9 120 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-205ENST00000550592 ARL15Q9NXU5 204 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 ALKBH4Q9NXW9 302 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 HDAC6Q9UBN7 1215 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 GOLGA3Q08378 1498 aa5.32□□□□□ -1.56
LIMA1-205ENST00000550592 RNF17Q9BXT8 1623 aaKnown RBP5.31□□□□□ -1.56
LIMA1-205ENST00000550592 GAGE10A6NGK3 116 aa5.31□□□□□ -1.56
LIMA1-205ENST00000550592 TEX22C9J3V5 150 aa5.31□□□□□ -1.56
LIMA1-205ENST00000550592 F5H0A9 414 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-205ENST00000550592 USP12O75317 370 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms