RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SMIM10L2BP0DMW5 78 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 ATP6V1B1P15313 513 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 XRCC1P18887 633 aaPredicted RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 CHRNA4P43681 627 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 GJA9P57773 515 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 POU5F1BQ06416 359 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 PCSK7Q16549 785 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 ARHGAP17Q68EM7 881 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 LAYNQ6UX15 382 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 GPRC5AQ8NFJ5 357 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 NPAS2Q99743 824 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 MROH8Q9H579 483 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 PIRO00625 290 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 PMPCBO75439 489 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 NPR3P17342 541 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 SPRP35270 261 aaPredicted RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 CACNB2Q08289 660 aaPredicted RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 LDB1Q86U70 411 aaPredicted RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 PSTKQ8IV42 348 aaKnown RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 TTC16Q8NEE8 873 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 WNT8BQ93098 351 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 ZNF419Q96HQ0 510 aaPredicted RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 NDNQ99608 321 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 DUSP16Q9BY84 665 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 TRIM4Q9C037 500 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 TKTL2Q9H0I9 626 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 CDH19Q9H159 772 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 COPS7BQ9H9Q2 264 aaPredicted RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 CRTAC1Q9NQ79 661 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 CLIC5Q9NZA1 410 aa15.33■□□□□ 0.04
USP28-214ENST00000545540 UBQLN1Q9UMX0 589 aaKnown RBP15.33■□□□□ 0.04
USP28-214ENST00000545540 PDE4DIPQ5VU43 2346 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 PDHXO00330 501 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 MOCS2O96007 188 aaPredicted RBP15.32■□□□□ 0.04
USP28-214ENST00000545540 SETSIPP0DME0 302 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 YBX3P16989 372 aaKnown RBP eCLIP15.32■□□□□ 0.04
USP28-214ENST00000545540 THOP1P52888 689 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 STRADAQ7RTN6 431 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 SATL1Q86VE3 508 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 CRYBG2Q8N1P7 616 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 NMD3Q96D46 503 aaKnown RBP15.32■□□□□ 0.04
USP28-214ENST00000545540 NPY6RQ99463 290 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 ACE2Q9BYF1 805 aaPredicted RBP15.32■□□□□ 0.04
USP28-214ENST00000545540 LRRC40Q9H9A6 602 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 MKS1Q9NXB0 559 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 OR12D3Q9UGF7 316 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 APPL1Q9UKG1 709 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 PEX1O43933 1283 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 SPATA31D3P0C874 917 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 GABRB3P28472 473 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 SEPT6Q14141 434 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 IYDQ6PHW0 289 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 SPATA31D4Q6ZUB0 917 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 PCDH20Q8N6Y1 951 aaKnown RBP15.32■□□□□ 0.04
USP28-214ENST00000545540 NDFIP2Q9NV92 336 aa15.32■□□□□ 0.04
USP28-214ENST00000545540 TRIM13O60858 407 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 GSTT1P30711 240 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 NOS2P35228 1153 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 GARSP41250 739 aaKnown RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 IRX1P78414 480 aaPredicted RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 MS4A2Q01362 244 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 BTKQ06187 659 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 ZNF792Q3KQV3 632 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 ESRP1Q6NXG1 681 aaKnown RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 UNC93AQ86WB7 457 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CEP97Q8IW35 865 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 NXNL1Q96CM4 212 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CMTM5Q96DZ9 223 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 IFT43Q96FT9 208 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 PCED1BQ96HM7 432 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CPNE1Q99829 537 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 SEMA6AQ9H2E6 1030 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CHST12Q9NRB3 414 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 IPPQ9Y573 584 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 ANKRD12Q6UB98 2062 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CCDC160A6NGH7 325 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 C9JVG2 144 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CXCL11O14625 94 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 DCLK1O15075 740 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 DARSP14868 501 aaKnown RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 VCLP18206 1134 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 PGFP49763 221 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 LIMK2P53671 638 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 MED21Q13503 144 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 DPYSQ14117 519 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 DGKDQ16760 1214 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 FAM91A1Q658Y4 838 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 NT5DC4Q86YG4 428 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 ZDHHC17Q8IUH5 632 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 FBXW8Q8N3Y1 598 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 SCAMP5Q8TAC9 235 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 PIP4K2CQ8TBX8 421 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 SLC10A4Q96EP9 437 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 SLC45A3Q96JT2 553 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 GAD1Q99259 594 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 GMPR2Q9P2T1 348 aaKnown RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 TLK1Q9UKI8 766 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 A0A1B0GTW7 788 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 MSI1O43347 362 aaKnown RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 LRIG2O94898 1065 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms