RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 C6orf106Q9H6K1 298 aaPredicted RBP4.3□□□□□ -1.72
SNHG1-220ENST00000544550 ERVMER34-1Q9H9K5 563 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 POLD4Q9HCU8 107 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 KCND2Q9NZV8 630 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 LARSQ9P2J5 1176 aaKnown RBP4.3□□□□□ -1.72
SNHG1-220ENST00000544550 THAP10Q9P2Z0 257 aaPredicted RBP4.3□□□□□ -1.72
SNHG1-220ENST00000544550 LSM7Q9UK45 103 aaKnown RBP4.3□□□□□ -1.72
SNHG1-220ENST00000544550 CPSF3Q9UKF6 684 aaKnown RBP4.3□□□□□ -1.72
SNHG1-220ENST00000544550 CDH9Q9ULB4 789 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 RNF114Q9Y508 228 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 PCDHB1Q9Y5F3 818 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 FHOD1Q9Y613 1164 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 CAPN6Q9Y6Q1 641 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 MYO18BQ8IUG5 2567 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 SDK1Q7Z5N4 2213 aa4.3□□□□□ -1.72
SNHG1-220ENST00000544550 SHROOM3Q8TF72 1996 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 PTPRJQ12913 1337 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 NAV2Q8IVL1 2488 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ANK1P16157 1881 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 A0A0B4J269 797 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 A0A1W2PPC4 97 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ESYT3A0FGR9 886 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 WASH3PC4AMC7 463 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 AGRPO00253 132 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 CBX4O00257 560 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 GABRDO14764 452 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 TRIM24O15164 1050 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 GSC2O15499 205 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 COCHO43405 550 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 TIMM44O43615 452 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 FAM189A1O60320 539 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 MAGEC1O60732 1142 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 RTN3O95197 1032 aaPredicted RBP4.29□□□□□ -1.72
SNHG1-220ENST00000544550 IL18RAPO95256 599 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 CBX7O95931 251 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 IGLV1-40P01703 118 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 PIGRP01833 764 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 DNTTP04053 509 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 GP1BAP07359 652 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 KRT10P13645 584 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ITGB6P18564 788 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 FSTP19883 344 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ACO1P21399 889 aaKnown RBP4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ACAT1P24752 427 aaKnown RBP4.29□□□□□ -1.72
SNHG1-220ENST00000544550 YWHAQP27348 245 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 CD38P28907 300 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ACSL1P33121 698 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 MCM7P33993 719 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 RXRGP48443 463 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 COPAP53621 1224 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 OXCT1P55809 520 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 CPSF6Q16630 551 aaKnown RBP eCLIP4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ZSCAN23Q3MJ62 389 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 LINC00303Q3SY05 128 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ZC3H12BQ5HYM0 836 aaKnown RBP4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SFMBT2Q5VUG0 894 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SNX30Q5VWJ9 437 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 KRT79Q5XKE5 535 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SLFN12LQ6IEE8 588 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 RINT1Q6NUQ1 792 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 FAM171BQ6P995 826 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 LAYNQ6UX15 382 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SERPINA13PQ6UXR4 307 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 TPGS1Q6ZTW0 290 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 C1orf186Q6ZWK4 172 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 USP53Q70EK8 1073 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 HTR3DQ70Z44 454 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 KANSL1Q7Z3B3 1105 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ANKS1BQ7Z6G8 1248 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 FAM124AQ86V42 546 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ZNF227Q86WZ6 799 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ADGRF2Q8IZF7 708 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 DAW1Q8N136 415 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 MFSD4AQ8N468 514 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ARL14Q8N4G2 192 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ARHGEF39Q8N4T4 335 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 LRRC52Q8N7C0 313 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 LRRN4CLQ8ND94 238 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 BVESQ8NE79 360 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 CACTINQ8WUQ7 758 aaKnown RBP4.29□□□□□ -1.72
SNHG1-220ENST00000544550 GOLGA1Q92805 767 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 FBXO32Q969P5 355 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SGF29Q96ES7 293 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 MRGPRX3Q96LB0 322 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SLC46A1Q96NT5 459 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SYT15Q9BQS2 421 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 TRIM9Q9C026 710 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 HAPLN2Q9GZV7 340 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ABCG4Q9H172 646 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SLC25A18Q9H1K4 315 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 USP29Q9HBJ7 922 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ASCL3Q9NQ33 180 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 AASDHPPTQ9NRN7 309 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 DDX19AQ9NUU7 478 aaKnown RBP4.29□□□□□ -1.72
SNHG1-220ENST00000544550 FANCLQ9NW38 375 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 GDAP2Q9NXN4 497 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 HSPBP1Q9NZL4 362 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 LRWD1Q9UFC0 647 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SCML1Q9UN30 329 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 L1RE1Q9UN81 338 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms