RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PRORYQ9H606 182 aa15.9■□□□□ 0.14
CLSTN3-213ENST00000541953 ERVMER34-1Q9H9K5 563 aa15.9■□□□□ 0.14
CLSTN3-213ENST00000541953 TMPRSS4Q9NRS4 437 aa15.9■□□□□ 0.14
CLSTN3-213ENST00000541953 PCDHB1Q9Y5F3 818 aa15.9■□□□□ 0.14
CLSTN3-213ENST00000541953 ASH1LQ9NR48 2969 aaKnown RBP15.9■□□□□ 0.14
CLSTN3-213ENST00000541953 BRINP1O60477 761 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 PAGE1O75459 146 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 ERBB2P04626 1255 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 HNF1BP35680 557 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 NUCB2P80303 420 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 SFSWAPQ12872 951 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 STIM1Q13586 685 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 SLC12A1Q13621 1099 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 RTP5Q14D33 572 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 MEA1Q16626 185 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 ARHGAP44Q17R89 818 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 ACCSLQ4AC99 568 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 ALFQ53S48 1182 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 TRIM65Q6PJ69 517 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 PRPF39Q86UA1 669 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 TRIM69Q86WT6 500 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 SH2D3CQ8N5H7 860 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 TMEM145Q8NBT3 493 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 C1orf131Q8NDD1 294 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 OR8D1Q8WZ84 308 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 SKA1Q96BD8 255 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 SRRTQ9BXP5 876 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 PLCB1Q9NQ66 1216 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 AK5Q9Y6K8 562 aa15.89■□□□□ 0.13
CLSTN3-213ENST00000541953 YKT6O15498 198 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 SMAD6O43541 496 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 RNGTTO60942 597 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 GADD45BO75293 160 aaPredicted RBP15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 ADCY5O95622 1261 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 C1SP09871 688 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 SRCP12931 536 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 CKMT2P17540 419 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 GLDCP23378 1020 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 CETN1Q12798 172 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 NME3Q13232 169 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 PTPN20Q4JDL3 420 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 PCSK4Q6UW60 755 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 OLFML1Q6UWY5 402 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 KDM7AQ6ZMT4 941 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 ZNF683Q8IZ20 524 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 SLC22A18ASQ8N1D0 253 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 CHST14Q8NCH0 376 aa15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 ZFR2Q9UPR6 939 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-213ENST00000541953 LY6G6EA0A0G2JKS1 128 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 A0A1W2PQU0 124 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 GOLGA6L4A6NEF3 574 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 MCF2LO15068 1137 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 SLC31A1O15431 190 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 FFAR2O15552 330 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 SLC7A4O43246 635 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 RRM1P23921 792 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 CCR1P32246 355 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 NNMTP40261 264 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 USP8P40818 1118 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 VASPP50552 380 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 CLDN2P57739 230 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 CDK17Q00537 523 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 SULT2A1Q06520 285 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 PAK1Q13153 545 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 RABGAP1LQ5R372 815 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 TTC39BQ5VTQ0 682 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 FOXR2Q6PJQ5 311 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 LINGO4Q6UY18 593 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 ERICH1Q86X53 443 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 OR13H1Q8NG92 308 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 SNIP1Q8TAD8 396 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 RFFLQ8WZ73 363 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 PPP1R13BQ96KQ4 1090 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 NRSN2Q9GZP1 204 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 KDM4CQ9H3R0 1056 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 PIGVQ9NUD9 493 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 VPS51Q9UID3 782 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 SLC25A13Q9UJS0 675 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 VPS28Q9UK41 221 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 U3KQA8 63 aa15.87■□□□□ 0.13
CLSTN3-213ENST00000541953 ZNF462Q96JM2 2506 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 A0A0D9SEW6 157 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 CASC3O15234 703 aaKnown RBP15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 MED7O43513 233 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 HSF2BPO75031 334 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 DAB1O75553 588 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 THEGLP0DJG4 465 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 DGKAP23743 735 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 ACP1P24666 158 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 STAT4Q14765 748 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 ZNF284Q2VY69 593 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 C5orf22Q49AR2 442 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 SETMARQ53H47 684 aaPredicted RBP15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 SLC45A4Q5BKX6 768 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 SEL1L3Q68CR1 1132 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 OR6B2Q6IFH4 312 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 GCNT7Q6ZNI0 430 aa15.86■□□□□ 0.13
CLSTN3-213ENST00000541953 IQCHQ86VS3 1027 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms