RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 SPATA20Q8TB22 786 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 STK32AQ8WU08 396 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 ERCC4Q92889 916 aaPredicted RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 CCDC47Q96A33 483 aaKnown RBP7.52□□□□□ -1.21
YBX3-209ENST00000540747 BTN2A3PQ96KV6 586 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 PREBQ9HCU5 417 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TJP2Q9UDY2 1190 aa7.52□□□□□ -1.21
YBX3-209ENST00000540747 TCAF2A6NFQ2 919 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 RNF103O00237 685 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 TRUB2O95900 331 aaKnown RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 APOEP02649 317 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 MPOP05164 745 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 THEGLP0DJG4 465 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 FMO5P49326 533 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 TMPRSS3P57727 454 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 GABREP78334 506 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 FKBP3Q00688 224 aaKnown RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 GCNT1Q02742 428 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 CENPCQ03188 943 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 C1QBPQ07021 282 aaKnown RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 LRMPQ12912 555 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 STAT4Q14765 748 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 TMEM259Q4ZIN3 620 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 TTC39BQ5VTQ0 682 aaPredicted RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 TCERG1LQ5VWI1 586 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 FAM46CQ5VWP2 391 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 RNF219Q5W0B1 726 aaPredicted RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 ANKRD40Q6AI12 368 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 FBXL22Q6P050 247 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 NEK5Q6P3R8 708 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 DENND1BQ6P3S1 775 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 GCNT7Q6ZNI0 430 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 Q6ZVU0 165 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 DSG4Q86SJ6 1040 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 TMEM110Q86TL2 294 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 ARHGEF19Q8IW93 802 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 LSMEM2Q8N112 164 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 SH2D3CQ8N5H7 860 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 OR13H1Q8NG92 308 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 OR8D1Q8WZ84 308 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 ARRDC3Q96B67 414 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 IFT43Q96FT9 208 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 KLHDC7BQ96G42 594 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 PRR11Q96HE9 360 aaPredicted RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 SPATA32Q96LK8 384 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 KREMEN1Q96MU8 473 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 NT5C1BQ96P26 610 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 NOX5Q96PH1 765 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 DEPDC7Q96QD5 511 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 SLC2A13Q96QE2 648 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 LGMNQ99538 433 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 FEM1AQ9BSK4 669 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 MIS12Q9H081 205 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 POLR1BQ9H9Y6 1135 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 USP29Q9HBJ7 922 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 METTL14Q9HCE5 456 aaKnown RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 CPNE5Q9HCH3 593 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 NLGN3Q9NZ94 848 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 ARMCX3Q9UH62 379 aaPredicted RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 ZFR2Q9UPR6 939 aaKnown RBP7.51□□□□□ -1.21
YBX3-209ENST00000540747 HS3ST2Q9Y278 367 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 TBC1D30Q9Y2I9 924 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 PCDHB4Q9Y5E5 795 aa7.51□□□□□ -1.21
YBX3-209ENST00000540747 A0A1W2PQU0 124 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 TRIM49BA6NDI0 452 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 CDRT15L2A8MXV6 281 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 B8ZZF3 427 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 E5RJQ4 531 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 F5H5T6 163 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 K7ESM1 405 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 SCAMP1O15126 338 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 P4HA2O15460 535 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 USP12O75317 370 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 CSO75390 466 aaKnown RBP7.5□□□□□ -1.21
YBX3-209ENST00000540747 ZNF202O95125 648 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 HSP90AA1P07900 732 aaKnown RBP7.5□□□□□ -1.21
YBX3-209ENST00000540747 SRCP12931 536 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 C6P13671 934 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 PRLRP16471 622 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 ACADSBP45954 432 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 NUMBP49757 651 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 OXCT1P55809 520 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 LRRC63Q05C16 580 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 FGL2Q14314 439 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 TAF5Q15542 800 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 DLG2Q15700 870 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 ISXQ2M1V0 245 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 ZNF658Q5TYW1 1059 aaPredicted RBP7.5□□□□□ -1.21
YBX3-209ENST00000540747 OTUD1Q5VV17 481 aaPredicted RBP7.5□□□□□ -1.21
YBX3-209ENST00000540747 HORMAD1Q86X24 394 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 CCDC117Q8IWD4 279 aaPredicted RBP7.5□□□□□ -1.21
YBX3-209ENST00000540747 ZNF683Q8IZ20 524 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 OR2A12Q8NGT7 310 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 VOPP1Q96AW1 172 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 FAM149B1Q96BN6 582 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 VCPIP1Q96JH7 1222 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 APOLD1Q96LR9 279 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 PSMB7Q99436 277 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 TRIM62Q9BVG3 475 aa7.5□□□□□ -1.21
YBX3-209ENST00000540747 DPH1Q9BZG8 443 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms