RNA–Protein interactions for RNA: ENST00000535527.5

CHFR-210, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 746 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-210	ENST00000535527	AHI1	Q8N157	1196 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	RTL3	Q8N8U3	475 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	RAPGEF5	Q92565	580 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	RPL10L	Q96L21	214 aa	Known RBP	13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	CSPG4P5	Q96PW8	444 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	GABRG3	Q99928	467 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	FEM1A	Q9BSK4	669 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	TMEM245	Q9H330	911 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	SEMA4G	Q9NTN9	838 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	SLCO3A1	Q9UIG8	710 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	PAXBP1	Q9Y5B6	917 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	STON1	Q9Y6Q2	735 aa		13.44	□□□□□ -0.26
CHFR-210	ENST00000535527	ABCA7	Q8IZY2	2146 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	BTNL10	A8MVZ5	291 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	WASH4P	A8MWX3	477 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527		K7ERQ8	282 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	EEF2K	O00418	725 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	PAPSS2	O95340	614 aa	Predicted RBP	13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	RHOC	P08134	193 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	ERCC2	P18074	760 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	AMPD1	P23109	780 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	EPHB2	P29323	1055 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	PML	P29590	882 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	CNR2	P34972	360 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	CCR3	P51677	355 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	AIF1	P55008	147 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	TPI1	P60174	286 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	MRPS21	P82921	87 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	SRSF5	Q13243	272 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	LRRK1	Q38SD2	2015 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	FBXO43	Q4G163	708 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	AFMID	Q63HM1	303 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	LINGO4	Q6UY18	593 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	LEKR1	Q6ZMV7	388 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	SYNPO	Q8N3V7	929 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	PQLC3	Q8N755	202 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	PCDH19	Q8TAB3	1148 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	WFIKKN2	Q8TEU8	576 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	TEKT4	Q8WW24	435 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	ARHGEF2	Q92974	986 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	HMCES	Q96FZ2	354 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	ZNF419	Q96HQ0	510 aa	Predicted RBP	13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	CELF6	Q96J87	481 aa	Known RBP	13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	LRRC19	Q9H756	370 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	VPS51	Q9UID3	782 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	ALG6	Q9Y672	507 aa		13.43	□□□□□ -0.26
CHFR-210	ENST00000535527	THADA	Q6YHU6	1953 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	MACROD2	A1Z1Q3	448 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	TTC34	A8MYJ7	566 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ARHGAP6	O43182	974 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	SMAD6	O43541	496 aa	Known RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	MFSD11	O43934	449 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ZNF821	O75541	412 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	OR1E1	P30953	314 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	METAP1	P53582	386 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	COPA	P53621	1224 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	LIMK1	P53667	647 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	GNA12	Q03113	381 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ADCY2	Q08462	1091 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ZNF177	Q13360	481 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	COL9A2	Q14055	689 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	EIF4H	Q15056	248 aa	Known RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	CRY1	Q16526	586 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	C11orf63	Q6NUN7	778 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	LRRC31	Q6UY01	552 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	SYT13	Q7L8C5	426 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	FRMD1	Q8N878	549 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	MDGA1	Q8NFP4	955 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	FRS2	Q8WU20	508 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	LRRN4	Q8WUT4	740 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	FAF2	Q96CS3	445 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ACE2	Q9BYF1	805 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	PACSIN2	Q9UNF0	486 aa	Predicted RBP	13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ERVW-1	Q9UQF0	538 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	PLXNA2	O75051	1894 aa		13.42	□□□□□ -0.26
CHFR-210	ENST00000535527	ASPM	Q8IZT6	3477 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	CNOT1	A5YKK6	2376 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	TYW5	A2RUC4	315 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	MAP3K6	O95382	1288 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	DLD	P09622	509 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	SRC	P12931	536 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	HOXB2	P14652	356 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	GABRG2	P18507	467 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	NTSR1	P30989	418 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	SSR1	P43307	286 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	NOP2	P46087	812 aa	Known RBP	13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	MAPKAPK2	P49137	400 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	FNTB	P49356	437 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	CDH6	P55285	790 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	MTA1	Q13330	715 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	SIM2	Q14190	667 aa	Predicted RBP	13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	LLGL1	Q15334	1064 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	DCAF12L1	Q5VU92	463 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	NCBP2-AS2	Q69YL0	99 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	IL31	Q6EBC2	164 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	AADACL2	Q6P093	401 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	PRR23B	Q6ZRT6	265 aa		13.41	□□□□□ -0.26
CHFR-210	ENST00000535527	KIAA1328	Q86T90	577 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms