RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CNTN1Q12860 1018 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 DPCR1Q3MIW9 517 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 SETMARQ53H47 684 aaPredicted RBP15.12■□□□□ 0.01
VPS28-215ENST00000531924 C6orf118Q5T5N4 469 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 SH2D3CQ8N5H7 860 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 MFSD2AQ8NA29 543 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 PIP4K2CQ8TBX8 421 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 ALG14Q96F25 216 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 NPY6RQ99463 290 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 NUP62CLQ9H1M0 184 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 ARHGEF38Q9NXL2 777 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 PPM1HQ9ULR3 514 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 DMTF1Q9Y222 760 aa15.12■□□□□ 0.01
VPS28-215ENST00000531924 FAM170AA1A519 330 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 GOLGA8SH3BPF8 625 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 KPNA3O00505 521 aaPredicted RBP15.11■□□□□ 0.01
VPS28-215ENST00000531924 ENC1O14682 589 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 WNT9AO14904 365 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 LATO43561 262 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 PLRG1O43660 514 aaKnown RBP15.11■□□□□ 0.01
VPS28-215ENST00000531924 SRGAP2O75044 1071 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 LSM8O95777 96 aaKnown RBP15.11■□□□□ 0.01
VPS28-215ENST00000531924 METAP1P53582 386 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 NXPH1P58417 271 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 SLC25A52Q3SY17 297 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 KLHDC7AQ5VTJ3 777 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 DHRS13Q6UX07 377 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 TFAP2DQ7Z6R9 452 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 SETD3Q86TU7 594 aaPredicted RBP15.11■□□□□ 0.01
VPS28-215ENST00000531924 EID2Q8N6I1 236 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 OR52K2Q8NGK3 314 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 MDM1Q8TC05 714 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 CNDP2Q96KP4 475 aaKnown RBP15.11■□□□□ 0.01
VPS28-215ENST00000531924 SPON2Q9BUD6 331 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 ERVMER34-1Q9H9K5 563 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 SARDHQ9UL12 918 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 FHOD1Q9Y613 1164 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 ASPMQ8IZT6 3477 aa15.11■□□□□ 0.01
VPS28-215ENST00000531924 FAM208BQ5VWN6 2430 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 A0A1W2PR77 199 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 FAM149AA5PLN7 773 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 PRAMEF26H0Y7S4 382 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 TAF4O00268 1085 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 CNTN5O94779 1100 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 CDK4P11802 303 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 OR1E1P30953 314 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 CHRNA3P32297 505 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 SCNN1AP37088 669 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 OVGP1Q12889 678 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 C5orf22Q49AR2 442 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 ALFQ53S48 1182 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 MIIPQ5JXC2 388 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 IQCHQ86VS3 1027 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 TRIM69Q86WT6 500 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 SAP25Q8TEE9 199 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 C1orf74Q96LT6 269 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 TBCBQ99426 244 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 PREBQ9HCU5 417 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 VPS51Q9UID3 782 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 HS3ST2Q9Y278 367 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 OR51B4Q9Y5P0 310 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 SNX10Q9Y5X0 201 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 DMXL2Q8TDJ6 3036 aa15.1■□□□□ 0.01
VPS28-215ENST00000531924 TRABD2BA6NFA1 517 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 E9PAM4 449 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 SNAP91O60641 907 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 RNGTTO60942 597 aaKnown RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 DKK1O94907 266 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 MT-CO1P00395 513 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 PRNPP04156 253 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 SRCP12931 536 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 JUPP14923 745 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 UCHL3P15374 230 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 TFE3P19532 575 aaPredicted RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 EEF1GP26641 437 aaKnown RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 EPHA8P29322 1005 aaPredicted RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 CDH5P33151 784 aaPredicted RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 HNF1BP35680 557 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 GABRB2P47870 512 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 CLCN6P51797 869 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 SMAD1Q15797 465 aaKnown RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 HS1BP3Q53T59 392 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 AGBL4Q5VU57 503 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 NAA35Q5VZE5 725 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 RETSATQ6NUM9 610 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 C19orf48Q6RUI8 117 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 LINGO4Q6UY18 593 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 TMPRSS12Q86WS5 348 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 XYLT1Q86Y38 959 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 MARCH9Q86YJ5 346 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 PDCD7Q8N8D1 485 aaKnown RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 DCAF4L2Q8NA75 395 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 CPA5Q8WXQ8 436 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 PGAP3Q96FM1 320 aaPredicted RBP15.09■□□□□ 0.01
VPS28-215ENST00000531924 KLHDC7BQ96G42 594 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 PPP1R16AQ96I34 528 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 STK33Q9BYT3 514 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 MPP6Q9NZW5 540 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 PCDHGA1Q9Y5H4 931 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 KNL1Q8NG31 2342 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms