RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ACAD11Q709F0 780 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 TDRD5Q8NAT2 981 aaKnown RBP19.64■□□□□ 0.73
VPS28-213ENST00000530983 OR6J1Q8NGC5 347 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 MOCOSQ96EN8 888 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 RTKNQ9BST9 563 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 DNAI2Q9GZS0 605 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 CHRAC1Q9NRG0 131 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 RRN3P2A6NIE6 340 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 ATP9BO43861 1147 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 CAPN15O75808 1086 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 TKTL1P51854 596 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 RABGGTBP53611 331 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 CCNA1P78396 465 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 ZBTB17Q13105 803 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 MPP3Q13368 585 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 ITGA7Q13683 1181 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 METTL21CQ5VZV1 264 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 KCNMB4Q86W47 210 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 GDPD5Q8WTR4 605 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 EZH1Q92800 747 aaPredicted RBP19.63■□□□□ 0.73
VPS28-213ENST00000530983 LENG8Q96PV6 779 aaPredicted RBP19.63■□□□□ 0.73
VPS28-213ENST00000530983 SLC9A7Q96T83 725 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 APOL2Q9BQE5 337 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 GATA5Q9BWX5 397 aaPredicted RBP19.63■□□□□ 0.73
VPS28-213ENST00000530983 KLHL4Q9C0H6 718 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 GBA3Q9H227 469 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 H3BNX3 289 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 CHRNGP07510 517 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 RAG1P15918 1043 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 PTPN1P18031 435 aaKnown RBP19.63■□□□□ 0.73
VPS28-213ENST00000530983 GSTT1P30711 240 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 AQP4P55087 323 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 MAP3K7CLP57077 242 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 TPI1P60174 286 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 SCAPQ12770 1279 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 KIAA0319Q5VV43 1072 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 KBTBD6Q86V97 674 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 TOP6BLQ8N6T0 577 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 NTAN1Q96AB6 310 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 VPS39Q96JC1 886 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 TCF7L2Q9NQB0 619 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 OXSMQ9NWU1 459 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 SSX2IPQ9Y2D8 614 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 RAD54BQ9Y620 910 aa19.63■□□□□ 0.73
VPS28-213ENST00000530983 ERI2A8K979 691 aaKnown RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 XPOTO43592 962 aaKnown RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 TIMM44O43615 452 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 SERPINB6P35237 376 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 CSRP3P50461 194 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 CDC42EP1Q00587 391 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 PCBP1Q15365 356 aaKnown RBP eCLIP19.62■□□□□ 0.73
VPS28-213ENST00000530983 UBXN11Q5T124 520 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 PDZD4Q76G19 769 aaPredicted RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 ZNF467Q7Z7K2 595 aaPredicted RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 ARRDC4Q8NCT1 418 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 CCDC28BQ9BUN5 200 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 C20orf96Q9NUD7 363 aaPredicted RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 GOLGA8QA0A0J9YX86 632 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 GOLGA8OA6NCC3 632 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 YJEFN3A6XGL0 299 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 GOLGA8NF8WBI6 632 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 NCAM2O15394 837 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 SMIM10L2AP0DMW4 78 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 SMIM10L2BP0DMW5 78 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 NFKB1P19838 968 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 IGFBP6P24592 240 aaPredicted RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 MPSTP25325 297 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 AIF1P55008 147 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 CSE1LP55060 971 aaKnown RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 TMEM151AQ8N4L1 468 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 B4GALNT2Q8NHY0 566 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 ULBP1Q9BZM6 244 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 VCX3BQ9H321 246 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 ACSS2Q9NR19 701 aa19.62■□□□□ 0.73
VPS28-213ENST00000530983 IARS2Q9NSE4 1012 aaKnown RBP19.62■□□□□ 0.73
VPS28-213ENST00000530983 GOLGA8TH3BQL2 631 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 TK2O00142 265 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 MATN2O00339 956 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 H2AFYO75367 372 aaKnown RBP19.61■□□□□ 0.73
VPS28-213ENST00000530983 CYP2C9P11712 490 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 UQCRBP14927 111 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 TPH1P17752 444 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 SERPINB5P36952 375 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 WSCD1Q658N2 575 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 ARHGAP22Q7Z5H3 698 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 SREK1Q8WXA9 508 aaKnown RBP19.61■□□□□ 0.73
VPS28-213ENST00000530983 HDAC11Q96DB2 347 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 KCNK16Q96T55 309 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 ACE2Q9BYF1 805 aaPredicted RBP19.61■□□□□ 0.73
VPS28-213ENST00000530983 WDR55Q9H6Y2 383 aaPredicted RBP19.61■□□□□ 0.73
VPS28-213ENST00000530983 FBXW11Q9UKB1 542 aa19.61■□□□□ 0.73
VPS28-213ENST00000530983 CASQ2O14958 399 aaPredicted RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 ZNF189O75820 626 aaPredicted RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 SBK3P0C264 359 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 AXLP30530 894 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 CCR10P46092 362 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 HCAR3P49019 387 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 PGGT1BP53609 377 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 XIAPP98170 497 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 DYNC1I2Q13409 638 aaKnown RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms