RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 MARK4Q96L34 752 aa13.5□□□□□ -0.25
TCOF1-214ENST00000515035 RTFDC1Q9BY42 306 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-214ENST00000515035 SPAG4Q9NPE6 437 aa13.5□□□□□ -0.25
TCOF1-214ENST00000515035 CMTM6Q9NX76 183 aa13.5□□□□□ -0.25
TCOF1-214ENST00000515035 ARHGAP28Q9P2N2 729 aa13.5□□□□□ -0.25
TCOF1-214ENST00000515035 RGSL1A5PLK6 1076 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 RGS20O76081 388 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 ARP10275 920 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 S100A3P33764 101 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 UBAP2LQ14157 1087 aaKnown RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 ARHGAP36Q6ZRI8 547 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 AKAP14Q86UN6 197 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 KLHL23Q8NBE8 558 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 ZNF540Q8NDQ6 660 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 CELF6Q96J87 481 aaKnown RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 MBOAT7Q96N66 472 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 SCUBE2Q9NQ36 999 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 XPNPEP3Q9NQH7 507 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 TAS2R13Q9NYV9 303 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 PCYOX1Q9UHG3 505 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 SPACA6W5XKT8 324 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 KCNK1O00180 336 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 LTFP02788 710 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 LBPP18428 481 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 TCF7P36402 384 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 PRKCQQ04759 706 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 ACER1Q8TDN7 264 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 PROX1Q92786 737 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 KLHL32Q96NJ5 620 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 CYP3A43Q9HB55 503 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 GMPPBQ9Y5P6 360 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 SNRPB2P08579 225 aaKnown RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 NELFEP18615 380 aaKnown RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 OR1G1P47890 313 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 GCNT1Q02742 428 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 LPIN1Q14693 890 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 MZT2AQ6P582 158 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 MILR1Q7Z6M3 343 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 LRRC17Q8N6Y2 441 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 EZH1Q92800 747 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 PHACTR1Q9C0D0 580 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 EME2A4GXA9 379 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 FBXO21O94952 628 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 SLC26A3P40879 764 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 CCNHP51946 323 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 FCHO2Q0JRZ9 810 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 RIPK1Q13546 671 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 ZNF268Q14587 947 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 QPCTQ16769 361 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 NDUFAF6Q330K2 333 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 ZNF621Q6ZSS3 439 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 KATNAL2Q8IYT4 538 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 KAZALD1Q96I82 304 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 SLC4A5Q9BY07 1137 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 CDHR5Q9HBB8 845 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 FBXO6Q9NRD1 293 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-214ENST00000515035 ING4Q9UNL4 249 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 TMX2Q9Y320 296 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 SALL1Q9NSC2 1324 aa13.49□□□□□ -0.25
TCOF1-214ENST00000515035 A0A087X0B3 334 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 TSPAN3O60637 253 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 NADKO95544 446 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 TDRD10Q5VZ19 366 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 FAM13CQ8NE31 585 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 MYLPFQ96A32 169 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 GMCL1Q96IK5 515 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ADGRE3Q9BY15 652 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 WDR12Q9GZL7 423 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 FBXO28Q9NVF7 368 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 SIK3Q9Y2K2 1263 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 MRPS7Q9Y2R9 242 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 AP3M1Q9Y2T2 418 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 HAT1O14929 419 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ENDOD1O94919 500 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 SEMA3DO95025 777 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 RPLP2P05387 115 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 SERPINA6P08185 405 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ABHD2P08910 425 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ODC1P11926 461 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 AMPD1P23109 780 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 RBL1P28749 1068 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 MAPKAPK2P49137 400 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ALDH9A1P49189 494 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 SEC23AQ15436 765 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 MARC1Q5VT66 337 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 KCNT2Q6UVM3 1135 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 TCAIMQ8N3R3 496 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 NEURL4Q96JN8 1562 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 TCF12Q99081 682 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 SLITRK2Q9H156 845 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 TULP2O00295 520 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 SSNA1O43805 119 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 VIL1P09327 827 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 CNPP09543 421 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 NR2C2P49116 596 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 DRG2P55039 364 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 CDC42P60953 191 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 PTSQ03393 145 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 RAD18Q9NS91 495 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms