RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DACT3Q96B18 629 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 FAM117AQ9C073 453 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GPR88Q9GZN0 384 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 VCX3BQ9H321 246 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 WDCPQ9H6R7 721 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ZNF304Q9HCX3 659 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 TBK1Q9UHD2 729 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 TNFRSF10BO14763 440 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 XPO1O14980 1071 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SYNCRIPO60506 623 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ADH1CP00326 375 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SOX5P35711 763 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GFPT1Q06210 699 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SPEM2Q0P670 501 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 INCA1Q0VD86 236 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SMARCB1Q12824 385 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 INAQ16352 499 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 CCDC122Q5T0U0 273 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 IL31Q6EBC2 164 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GPR161Q8N6U8 529 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 FAM71BQ8TC56 605 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SPATA18Q8TC71 538 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 WFDC5Q8TCV5 224 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 C2orf15Q8WU43 125 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 CD101Q93033 1021 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ELSPBP1Q96BH3 223 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 PCDHB18PQ96TA0 734 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 PKMYT1Q99640 499 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 FUT8Q9BYC5 575 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SIX2Q9NPC8 291 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SPHK2Q9NRA0 654 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 EHD2Q9NZN4 543 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 CTTNBP2NLQ9P2B4 639 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 VPS28Q9UK41 221 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GMEB2Q9UKD1 530 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 WDR37Q9Y2I8 494 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SGK1O00141 431 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 KDM1AO60341 852 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 FTLP02792 175 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 APODP05090 189 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 FESP07332 822 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 KRT3P12035 628 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 HOXB2P14652 356 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 DYNLT1P63172 113 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 GCNT1Q02742 428 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SIM2Q14190 667 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 TMEM214Q6NUQ4 689 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 NEK5Q6P3R8 708 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 LCLAT1Q6UWP7 414 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SND1Q7KZF4 910 aaKnown RBP eCLIP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 TAOK1Q7L7X3 1001 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 CPNE8Q86YQ8 564 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ZDHHC14Q8IZN3 488 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 OSCP1Q8WVF1 389 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 RXFP2Q8WXD0 754 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 DTNBP1Q96EV8 351 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 C2orf49Q9BVC5 232 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 TNKS2Q9H2K2 1166 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 DHX35Q9H5Z1 703 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ABCB6Q9NP58 842 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ARHGEF38Q9NXL2 777 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 EPS15L1Q9UBC2 864 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 SLCO3A1Q9UIG8 710 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 INTUQ9ULD6 942 aa8.09□□□□□ -1.11
LIMCH1-219ENST00000514096 ASCC3Q8N3C0 2202 aaKnown RBP8.09□□□□□ -1.12
LIMCH1-219ENST00000514096 PRR33A8MZF0 331 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 CHADO15335 359 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 SART1O43290 800 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 ACSL4O60488 711 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 GFRA3O60609 400 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 NOL4O94818 638 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 IL1BP01584 269 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 PYGMP11217 842 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 AOC1P19801 751 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 SDC4P31431 198 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 GKP32189 559 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 RFC1P35251 1148 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 HOXD12P35452 270 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 MAGEA11P43364 429 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 CLDN10P78369 228 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 BASP1P80723 227 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 SDE2Q6IQ49 451 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM47EQ6ZV65 393 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 SNX32Q86XE0 403 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 WDTC1Q8N5D0 677 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 DTWD2Q8NBA8 298 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 CEP70Q8NHQ1 597 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 EPS8L1Q8TE68 723 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 SHC3Q92529 594 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 PSMB7Q99436 277 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 NDNQ99608 321 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 IER2Q9BTL4 223 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 VCX3AQ9NNX9 186 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 PPANQ9NQ55 473 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 CNGB3Q9NQW8 809 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 HACD3Q9P035 362 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 DLGAP2Q9P1A6 1054 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 CROTQ9UKG9 612 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 PLAAQ9Y263 795 aa8.08□□□□□ -1.12
LIMCH1-219ENST00000514096 COQ4Q9Y3A0 265 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms