RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 H0YHG0 523 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 FOXN3O00409 490 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 EIF3HO15372 352 aaKnown RBP eCLIP8.28□□□□□ -1.084e-6■■■■■ 29.2
SCN1A-207ENST00000507401 TSPAN3O60637 253 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 TRUB2O95900 331 aaKnown RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 IGLV3-25P01717 112 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 ADRB1P08588 477 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 DLDP09622 509 aaKnown RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 GOLGA6DP0CG33 693 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 KRT9P35527 623 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 IRX4P78413 519 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 ARID5AQ03989 594 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 ZBTB16Q05516 673 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 ZNF33AQ06730 810 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 PDCLQ13371 301 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 CAMK2GQ13555 558 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 ZNF234Q14588 700 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 DUOXA1Q1HG43 343 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 DPCR1Q3MIW9 517 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 FUT11Q495W5 492 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 FILIP1LQ4L180 1135 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 MS4A13Q5J8X5 152 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 PPM1JQ5JR12 505 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 MIIPQ5JXC2 388 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 DAB2IPQ5VWQ8 1189 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 LYSMD4Q5XG99 296 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 GJB7Q6PEY0 223 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 TMPRSS6Q8IU80 811 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 ZDHHC17Q8IUH5 632 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 EGFL6Q8IUX8 553 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 CCDC117Q8IWD4 279 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 FAM71AQ8IYT1 594 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 OTUD6BQ8N6M0 293 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 HJURPQ8NCD3 748 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 CADM4Q8NFZ8 388 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 PRCCQ92733 491 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 TTC17Q96AE7 1141 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 FAM149B1Q96BN6 582 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 IQCDQ96DY2 449 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 SIPA1Q96FS4 1042 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 LMLNQ96KR4 655 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 BTN2A3PQ96KV6 586 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 NUSAP1Q9BXS6 441 aaKnown RBP8.28□□□□□ -1.08
SCN1A-207ENST00000507401 CIPCQ9C0C6 399 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 TMEM245Q9H330 911 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 FBRSQ9HAH7 460 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 ACP6Q9NPH0 428 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 TMEM9BQ9NQ34 198 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 TMEM74BQ9NUR3 256 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 GOLGA6AQ9NYA3 693 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 SUN2Q9UH99 717 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 SLC6A14Q9UN76 642 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 RAD54BQ9Y620 910 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 NCOR2Q9Y618 2525 aa8.28□□□□□ -1.08
SCN1A-207ENST00000507401 TNRC6BQ9UPQ9 1833 aaKnown RBP8.27□□□□□ -1.09
SCN1A-207ENST00000507401 C4orf47A7E2U8 309 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 KCNU1A8MYU2 1149 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 KCNJ18B7U540 433 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 CDX4O14627 284 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-207ENST00000507401 TBL1XO60907 577 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 HSF2BPO75031 334 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 NDUFS2O75306 463 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 APOEP02649 317 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 ASLP04424 464 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 EPHX1P07099 455 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 SERPINF2P08697 491 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 PABPC1P11940 636 aaKnown RBP8.27□□□□□ -1.09
SCN1A-207ENST00000507401 POLR2EP19388 210 aaKnown RBP8.27□□□□□ -1.09
SCN1A-207ENST00000507401 CSRP1P21291 193 aaKnown RBP8.27□□□□□ -1.09
SCN1A-207ENST00000507401 ITPKAP23677 461 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 CD6P30203 668 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 SLC6A4P31645 630 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 CTSOP43234 321 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-207ENST00000507401 TPMTP51580 245 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 RAB15P59190 212 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 SARNPP82979 210 aaKnown RBP8.27□□□□□ -1.09
SCN1A-207ENST00000507401 CDK17Q00537 523 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 SLC6A3Q01959 620 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 KCNMA1Q12791 1236 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 SLC12A1Q13621 1099 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 KCNJ12Q14500 433 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 TRIM61Q5EBN2 209 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 TCP11X2Q5H9J9 407 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 WDR45BQ5MNZ6 344 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 SYCP2LQ5T4T6 812 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 KLHDC7AQ5VTJ3 777 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 MBLAC2Q68D91 279 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 NADSYN1Q6IA69 706 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 TCEAL6Q6IPX3 200 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 EMBQ6PCB8 327 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 RFWD3Q6PCD5 774 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 SERPINA13PQ6UXR4 307 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 CHST9Q7L1S5 443 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 ARFGAP2Q8N6H7 521 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 LRRN4CLQ8ND94 238 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 OR2T3Q8NH03 318 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 CCHCR1Q8TD31 782 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 DNASE2BQ8WZ79 361 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 TCEAL3Q969E4 200 aa8.27□□□□□ -1.09
SCN1A-207ENST00000507401 MIEF2Q96C03 454 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms