RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 ZNF670Q9BS34 389 aa12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 ACE2Q9BYF1 805 aaPredicted RBP12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 NOL6Q9H6R4 1146 aaKnown RBP12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 VPS28Q9UK41 221 aa12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 AMFRQ9UKV5 643 aa12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 MMP17Q9ULZ9 603 aa12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 PLA2G4CQ9UP65 541 aa12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.2□□□□□ -0.46
PDLIM5-208ENST00000504489 DOCK9Q9BZ29 2069 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CXorf51AA0A1B0GTR3 108 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 C3orf70A6NLC5 250 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 RAMP2O60895 175 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 ADAM23O75077 832 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 PALMO75781 387 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 PAPSS2O95340 614 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 SRPRAP08240 638 aaKnown RBP12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 TNNT1P13805 278 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CTNNA2P26232 953 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CTNNA1P35221 906 aaKnown RBP12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CCR3P51677 355 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 POLD3Q15054 466 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 TAZQ16635 292 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 PTPRNQ16849 979 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 PARP15Q460N3 678 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 ANKRD20A8PQ5CZ79 823 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 SDE2Q6IQ49 451 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 C1orf210Q8IVY1 113 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 KATNAL2Q8IYT4 538 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CHPFQ8IZ52 775 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CCDC33Q8N5R6 958 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 OR7D4Q8NG98 312 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CYB5D2Q8WUJ1 264 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 RNF157Q96PX1 679 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 ACOX2Q99424 681 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 GABRG3Q99928 467 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 C2orf49Q9BVC5 232 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CALN1Q9BXU9 219 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 KLC2Q9H0B6 622 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 TMEM245Q9H330 911 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 LRRC19Q9H756 370 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 PRDM16Q9HAZ2 1276 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 LZTFL1Q9NQ48 299 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 KLHL11Q9NVR0 708 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 SPATA6Q9NWH7 488 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 ERVW-1Q9UQF0 538 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 PCDHA3Q9Y5H8 950 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CAPN6Q9Y6Q1 641 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 STON1Q9Y6Q2 735 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 ABCA7Q8IZY2 2146 aa12.19□□□□□ -0.46
PDLIM5-208ENST00000504489 CCDC66A2RUB6 948 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 LRRD1A4D1F6 860 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 RASA4BC9J798 803 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 SGK1O00141 431 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ZSCAN12O43309 604 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 RASA4O43374 803 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 HRO43593 1189 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ZMPSTE24O75844 475 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ZRANB2O95218 330 aaKnown RBP eCLIP12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 KRT1P04264 644 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 IL12RB1P42701 662 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 CTSOP43234 321 aaPredicted RBP12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 CXCL12P48061 93 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ST8SIA6P61647 398 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 SLC20A2Q08357 652 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 NUMA1Q14980 2115 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ODF2Q5BJF6 829 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 AFMIDQ63HM1 303 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 IL31Q6EBC2 164 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 TMCO3Q6UWJ1 677 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 PEX26Q7Z412 305 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 REXO1L1PQ8IX06 675 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 RCOR2Q8IZ40 523 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 EXD1Q8NHP7 514 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 PCDH19Q8TAB3 1148 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 KRT35Q92764 455 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 MYO19Q96H55 970 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 MRGPRX3Q96LB0 322 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 SPON2Q9BUD6 331 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ATP13A1Q9HD20 1204 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ZDHHC4Q9NPG8 344 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ETNK2Q9NVF9 386 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 CACNA2D2Q9NY47 1150 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 VPS51Q9UID3 782 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 SLC25A13Q9UJS0 675 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 HPCAL4Q9UM19 191 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 HS3ST2Q9Y278 367 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 VPS9D1Q9Y2B5 631 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 PCDHGA10Q9Y5H3 936 aa12.18□□□□□ -0.46
PDLIM5-208ENST00000504489 ZSCAN5CA6NGD5 496 aaPredicted RBP12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 ARHGAP42A6NI28 874 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 MIF4GDA9UHW6 222 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 WASH3PC4AMC7 463 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 LAMTOR5O43504 91 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 KDELR3O43731 214 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SNAP91O60641 907 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 HOXB2P14652 356 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 PRKCHP24723 683 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SERPINB6P35237 376 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 ACVRL1P37023 503 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 NNMTP40261 264 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms