RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SATB1Q01826 763 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 LBRQ14739 615 aaKnown RBP8.54□□□□□ -1.04
USP54-215ENST00000497106 FAXCQ5TGI0 409 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 KDM7AQ6ZMT4 941 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 CPT1BQ92523 772 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 LGMNQ99538 433 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 CLSTN3Q9BQT9 956 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 SEMA4AQ9H3S1 761 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ZDHHC18Q9NUE0 388 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 IL37Q9NZH6 218 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 HACD3Q9P035 362 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 CFAP97Q9P2B7 532 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 C2orf81A6NN90 581 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 KCNK1O00180 336 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 CCL16O15467 120 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 MAP3K6O95382 1288 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 AP2A1O95782 977 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ADH1CP00326 375 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 HLA-DPA1P20036 260 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 SFSWAPQ12872 951 aaKnown RBP8.54□□□□□ -1.04
USP54-215ENST00000497106 PCID2Q5JVF3 399 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 TMEM240Q5SV17 173 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ATG16L1Q676U5 607 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 PDPK2PQ6A1A2 396 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ZNF449Q6P9G9 518 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 POTEHQ6S545 545 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 SCD5Q86SK9 330 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 KIRREL3Q8IZU9 778 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ZNF669Q96BR6 464 aaPredicted RBP8.54□□□□□ -1.04
USP54-215ENST00000497106 TRABDQ9H4I3 376 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 FAM96AQ9H5X1 160 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 TASP1Q9H6P5 420 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 WDR6Q9NNW5 1121 aaKnown RBP8.54□□□□□ -1.04
USP54-215ENST00000497106 PSD3Q9NYI0 1048 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 CPQQ9Y646 472 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 CBX4O00257 560 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ZSCAN5DPP0CG00 497 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 BRAFP15056 766 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 SYN1P17600 705 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 NFKB1P19838 968 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ELK3P41970 407 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 GNA12Q03113 381 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 MS4A13Q5J8X5 152 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 UMODL1-AS1Q8N2C9 162 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ARFGAP1Q8N6T3 406 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 PDCD7Q8N8D1 485 aaKnown RBP8.54□□□□□ -1.04
USP54-215ENST00000497106 FBF1Q8TES7 1133 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 PPP4R1Q8TF05 950 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 SLC25A51Q9H1U9 297 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 MAN1C1Q9NR34 630 aa8.54□□□□□ -1.04
USP54-215ENST00000497106 ARIH1Q9Y4X5 557 aaPredicted RBP8.54□□□□□ -1.04
USP54-215ENST00000497106 SOAT2O75908 522 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ZWINTO95229 277 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 MYBL2P10244 700 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 PTPN3P26045 913 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 HOXA9P31269 272 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ATP1A2P50993 1020 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 DMC1Q14565 340 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 TEKT5Q96M29 485 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 CCSER2Q9H7U1 834 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 NMUR1Q9HB89 426 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 TBK1Q9UHD2 729 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 RPS6KL1Q9Y6S9 549 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 PMPCBO75439 489 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 FGF1P05230 155 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ETS1P14921 441 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 HTRA4P83105 476 aaPredicted RBP8.53□□□□□ -1.04
USP54-215ENST00000497106 ZNF844Q08AG5 666 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 SETDB1Q15047 1291 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 LONRF1Q17RB8 773 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 RAPH1Q70E73 1250 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 MAB21L3Q8N8X9 362 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 TTC8Q8TAM2 541 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 WFIKKN2Q8TEU8 576 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 FCRL5Q96RD9 977 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 EBNA1BP2Q99848 306 aaKnown RBP8.53□□□□□ -1.04
USP54-215ENST00000497106 NME7Q9Y5B8 376 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 FAM92AA1XBS5 289 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 GRM6O15303 877 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 TSPAN3O60637 253 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 NFATC1O95644 943 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ATP5BP06576 529 aaKnown RBP8.53□□□□□ -1.04
USP54-215ENST00000497106 RABGGTBP53611 331 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ACCSLQ4AC99 568 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ZDHHC24Q6UX98 284 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 CD300LGQ6UXG3 332 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 RIPOR3Q96MK2 946 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 SFXN1Q9H9B4 322 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 RAD18Q9NS91 495 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 C20orf96Q9NUD7 363 aaPredicted RBP8.53□□□□□ -1.04
USP54-215ENST00000497106 GRTP1Q5TC63 336 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 SNX30Q5VWJ9 437 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 MRNIPQ6NTE8 343 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 FBXL22Q6P050 247 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 IQCKQ8N0W5 287 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.53□□□□□ -1.04
USP54-215ENST00000497106 NAT8LQ8N9F0 302 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 KHSRPQ92945 711 aaKnown RBP eCLIP8.53□□□□□ -1.04
USP54-215ENST00000497106 PAFAH2Q99487 392 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 CPNE1Q99829 537 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms