RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 STK39Q9UEW8 545 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ZMYM5Q9UJ78 669 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 DNPEPQ9ULA0 475 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 FAM50BQ9Y247 325 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ARIH1Q9Y4X5 557 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 CYP3A7-CYP3A51PA0A087WV96 503 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 A0A096LPK6 155 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 CXCL14O95715 111 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ADRB2P07550 413 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ELNP15502 786 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 CYP3A7P24462 503 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 POM121L1PQ3SYA9 428 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 LRRN4CLQ8ND94 238 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 TMEM161BQ8NDZ6 487 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 IL31RAQ8NI17 732 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 METTL6Q8TCB7 284 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 SOHLH2Q9NX45 425 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 SNX13Q9Y5W8 968 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 TMEM131LA2VDJ0 1609 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 AGRPO00253 132 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 NUDT14O95848 222 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 MAPK8P45983 427 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ZNF655Q8N720 491 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 USP7Q93009 1102 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 VPS33AQ96AX1 596 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ARL15Q9NXU5 204 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 CRYL1Q9Y2S2 319 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 COMMD3-BMI1R4GMX3 469 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 H3BMM5 538 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 USP12O75317 370 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 DGKAP23743 735 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 TNFSF9P41273 254 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PIK3CGP48736 1102 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 SARSP49591 514 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 GPR15P49685 360 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 MARSP56192 900 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PPIDQ08752 370 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PARP6Q2NL67 630 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 ANKRD23Q86SG2 305 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PIF1Q9H611 641 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 ZNF862O60290 1169 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 CALB2P22676 271 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 KDELR1P24390 212 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 GSTT1P30711 240 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 RRP1BQ14684 758 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 SCARA3Q6AZY7 606 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 RAET1GQ6H3X3 334 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PIGZQ86VD9 579 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 HJURPQ8NCD3 748 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 MRPL48Q96GC5 212 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 MLPHQ9BV36 600 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 ZYG11BQ9C0D3 744 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PTPRHQ9HD43 1115 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 AASDHPPTQ9NRN7 309 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 SIGLEC16A6NMB1 481 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 CATP04040 527 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 CLTBP09497 229 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 RARAP10276 462 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 CD86P42081 329 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 SLC1A6P48664 564 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 CCT8P50990 548 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 NOL9Q5SY16 702 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 OPTCQ9UBM4 332 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 TAGLN3Q9UI15 199 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 NAALADL1Q9UQQ1 740 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 GLTPD2A6NH11 291 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 GNRH1P01148 92 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 HOXB8P17481 243 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PFKPQ01813 784 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 VAC14Q08AM6 782 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PAGE2BQ5JRK9 111 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 NT5DC1Q5TFE4 455 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 CCDC103Q8IW40 242 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PPTC7Q8NI37 304 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 ATP13A3Q9H7F0 1226 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 ATXN10Q9UBB4 475 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 GLUD1P00367 558 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 FYNP06241 537 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 PSMC3P17980 439 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 GPR1P46091 355 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 ITGA7Q13683 1181 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 FAM110CQ1W6H9 321 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 SNX30Q5VWJ9 437 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 ELMO1Q92556 727 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 HAS1Q92839 578 aa13.34□□□□□ -0.27
PTPRF-215ENST00000496447 FAM126AQ9BYI3 521 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 COPG1Q9Y678 874 aaKnown RBP13.34□□□□□ -0.27
PTPRF-215ENST00000496447 TRDMT1O14717 391 aaKnown RBP13.33□□□□□ -0.27
PTPRF-215ENST00000496447 SERPINE1P05121 402 aa13.33□□□□□ -0.27
PTPRF-215ENST00000496447 ANGPT1Q15389 498 aa13.33□□□□□ -0.27
PTPRF-215ENST00000496447 TRMT5Q32P41 509 aaKnown RBP13.33□□□□□ -0.27
PTPRF-215ENST00000496447 ZNF544Q6NX49 715 aa13.33□□□□□ -0.27
PTPRF-215ENST00000496447 SCUBE1Q8IWY4 988 aa13.33□□□□□ -0.27
PTPRF-215ENST00000496447 KATNAL2Q8IYT4 538 aa13.33□□□□□ -0.27
PTPRF-215ENST00000496447 ZNF786Q8N393 782 aa13.33□□□□□ -0.27
PTPRF-215ENST00000496447 TCF7L2Q9NQB0 619 aa13.33□□□□□ -0.27
PTPRF-215ENST00000496447 TRIM13O60858 407 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 IL1BP01584 269 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 PRKAA2P54646 552 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 TRAF2Q12933 501 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms