RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	MIR1-1HG	Q9H1L0	117 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	IL21R	Q9HBE5	538 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	CSNK1G1	Q9HCP0	422 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	PNPLA8	Q9NP80	782 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	ACP6	Q9NPH0	428 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	TLR8	Q9NR97	1041 aa	Known RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	CACNA2D2	Q9NY47	1150 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	GMIP	Q9P107	970 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	RAX	Q9Y2V3	346 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	COL5A1	P20908	1838 aa	Predicted RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	ANKRD62	A6NC57	917 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	MEI4	A8MW99	385 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	CAPN9	O14815	690 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	SART1	O43290	800 aa	Known RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	FBXO21	O94952	628 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	TBX18	O95935	607 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	ZBED1	O96006	694 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	RALA	P11233	206 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	TYR	P14679	529 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	DES	P17661	470 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	GPD2	P43304	727 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	PGF	P49763	221 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	TKTL1	P51854	596 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	SLC5A3	P53794	718 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	TBX2	Q13207	712 aa	Predicted RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	SLC14A1	Q13336	389 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	HIF1A	Q16665	826 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	EFHC1	Q5JVL4	640 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	OR6B2	Q6IFH4	312 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	DENND1B	Q6P3S1	775 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	TADA2B	Q86TJ2	420 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	PIGZ	Q86VD9	579 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	TMTC1	Q8IUR5	882 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	ZCCHC9	Q8N567	271 aa	Known RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	SLC35F5	Q8WV83	523 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	CPA5	Q8WXQ8	436 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	KCTD13	Q8WZ19	329 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	C18orf8	Q96DM3	657 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	MRGPRX1	Q96LB2	322 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	XPO6	Q96QU8	1125 aa	Known RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	TRIM62	Q9BVG3	475 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	GPR174	Q9BXC1	333 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	GAREM1	Q9H706	876 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	PRDM16	Q9HAZ2	1276 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	LUC7L	Q9NQ29	371 aa	Known RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	ABHD10	Q9NUJ1	306 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	PLK2	Q9NYY3	685 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	NOVA2	Q9UNW9	492 aa	Known RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	APOBEC2	Q9Y235	224 aa	Known RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	STARD13	Q9Y3M8	1113 aa		9.06	□□□□□ -0.96
USP4-213	ENST00000488520	ARID1B	Q8NFD5	2236 aa	Predicted RBP	9.06	□□□□□ -0.96
USP4-213	ENST00000488520	HELZ2	Q9BYK8	2649 aa	Known RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	EIF4E1B	A6NMX2	242 aa	Known RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	TMCO5B	A8MYB1	307 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	MDM4	O15151	490 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	TLR5	O60602	858 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	MFAP3L	O75121	409 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	BEST1	O76090	585 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CALB1	P05937	261 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	NCAM1	P13591	858 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	ADH6	P28332	368 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CYLC1	P35663	651 aa	Predicted RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	PRKCI	P41743	596 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	DGKG	P49619	791 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	SPA17	Q15506	151 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CCDC157	Q569K6	752 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	WDR45B	Q5MNZ6	344 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CCDC122	Q5T0U0	273 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	DCAF12L1	Q5VU92	463 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	ACAD10	Q6JQN1	1059 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	PMF1	Q6P1K2	205 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CACUL1	Q86Y37	369 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	ZDHHC17	Q8IUH5	632 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	TMEM151A	Q8N4L1	468 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	BEND7	Q8N7W2	519 aa	Predicted RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	RNF139	Q8WU17	664 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	OVCA2	Q8WZ82	227 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CCDC97	Q96F63	343 aa	Predicted RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	TOE1	Q96GM8	510 aa	Known RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CRELD1	Q96HD1	420 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	PANX2	Q96RD6	677 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CDK5RAP1	Q96SZ6	601 aa	Known RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	DNAJC7	Q99615	494 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	GABRG3	Q99928	467 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CD248	Q9HCU0	757 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	CNGB3	Q9NQW8	809 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	ADAM22	Q9P0K1	906 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	SUSD2	Q9UGT4	822 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	ADAMTS1	Q9UHI8	967 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	NAGPA	Q9UK23	515 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	NUDT5	Q9UKK9	219 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	PCOLCE2	Q9UKZ9	415 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520	STRIP2	Q9ULQ0	834 aa		9.05	□□□□□ -0.96
USP4-213	ENST00000488520		A0A1B0GTW7	788 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	SSU72P8	A0A1W2PR75	194 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	FAM149A	A5PLN7	773 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	PIK3R2	O00459	728 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CACNG3	O60359	315 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CBFA2T3	O75081	653 aa		9.04	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms