RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 SNX10Q9Y5X0 201 aa23.2■■□□□ 1.3
PTPN4-211ENST00000488279 DRGXA6NNA5 263 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 C10orf142B7Z368 130 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 C1QTNF3-AMACRE9PGA6 284 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 I6L893 689 aaPredicted RBP23.19■■□□□ 1.3
PTPN4-211ENST00000488279 ALOX15BO15296 676 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 SLC7A4O43246 635 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 CD38P28907 300 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 GRK6P43250 576 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 NAA35Q5VZE5 725 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 Q6ZVU0 165 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 ZNF683Q8IZ20 524 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 ATP11CQ8NB49 1132 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 EPS8L1Q8TE68 723 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 SERAC1Q96JX3 654 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 TMEM59LQ9UK28 342 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 HS3ST2Q9Y278 367 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 BTBD3Q9Y2F9 522 aa23.19■■□□□ 1.3
PTPN4-211ENST00000488279 FARP1Q9Y4F1 1045 aaPredicted RBP23.19■■□□□ 1.3
PTPN4-211ENST00000488279 BNIP3LO60238 219 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 GFPT2O94808 682 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 FLT3P36888 993 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 METAP1P53582 386 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 NOMO3P69849 1222 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 KRT31Q15323 416 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 SLC45A4Q5BKX6 768 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 FKBP15Q5T1M5 1219 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 C6orf118Q5T5N4 469 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 CDKAL1Q5VV42 579 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 ARCQ7LC44 396 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 PRPF39Q86UA1 669 aaKnown RBP23.18■■□□□ 1.3
PTPN4-211ENST00000488279 ZCCHC14Q8WYQ9 949 aaKnown RBP23.18■■□□□ 1.3
PTPN4-211ENST00000488279 FAM131CQ96AQ9 280 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 HAPLN3Q96S86 360 aa23.18■■□□□ 1.3
PTPN4-211ENST00000488279 A0A1B0GTQ1 180 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 E9PAM4 449 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 PLK4O00444 970 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 LATO43561 262 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 SRGAP2O75044 1071 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 RTN2O75298 545 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 MT-CO1P00395 513 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 WNT1P04628 370 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 ATXN1LP0C7T5 689 aaKnown RBP23.17■■□□□ 1.3
PTPN4-211ENST00000488279 POLR2FP61218 127 aaKnown RBP23.17■■□□□ 1.3
PTPN4-211ENST00000488279 IL9RQ01113 521 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 INAVAQ3KP66 663 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 PIP4K2CQ8TBX8 421 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 CCDC114Q96M63 670 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 CFAP57Q96MR6 1250 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 PSMB7Q99436 277 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 ELF4Q99607 663 aaPredicted RBP23.17■■□□□ 1.3
PTPN4-211ENST00000488279 GANQ9H2C0 597 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 TMPRSS4Q9NRS4 437 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 FAM207AQ9NSI2 230 aaPredicted RBP23.17■■□□□ 1.3
PTPN4-211ENST00000488279 MPP6Q9NZW5 540 aa23.17■■□□□ 1.3
PTPN4-211ENST00000488279 IGLV3-10A0A075B6K4 115 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 WNT9AO14904 365 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 TNFSF14O43557 240 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 PLRG1O43660 514 aaKnown RBP23.16■■□□□ 1.3
PTPN4-211ENST00000488279 SNAP91O60641 907 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 SRCP12931 536 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 OR1E1P30953 314 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 NUDT1P36639 197 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 KLK7P49862 253 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 CDR2Q01850 454 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 CNTN1Q12860 1018 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 POM121L1PQ3SYA9 428 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 PRAMEF14Q5SWL7 426 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 TFAP2DQ7Z6R9 452 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 SLC20A1Q8WUM9 679 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 GDF3Q9NR23 364 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 FANCLQ9NW38 375 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 TOR4AQ9NXH8 423 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 VPS51Q9UID3 782 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 NOCTQ9UK39 431 aaKnown RBP23.16■■□□□ 1.3
PTPN4-211ENST00000488279 IGF2RP11717 2491 aa23.16■■□□□ 1.3
PTPN4-211ENST00000488279 A0A0D9SEW6 157 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 A0A1W2PR77 199 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 GOLGA8CPA6NN73 597 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 TLR4O00206 839 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 SOX5P35711 763 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 PPP2CBP62714 309 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 PPP2CAP67775 309 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 CCDC15Q0P6D6 951 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 TRNP1Q6NT89 227 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 CCNI2Q6ZMN8 369 aaPredicted RBP23.15■■□□□ 1.3
PTPN4-211ENST00000488279 BNIPLQ7Z465 357 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 FAM131BQ86XD5 332 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 DCAF4L2Q8NA75 395 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 ARHGAP20Q9P2F6 1191 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 DAAM1Q9Y4D1 1078 aa23.15■■□□□ 1.3
PTPN4-211ENST00000488279 CABIN1Q9Y6J0 2220 aa23.14■■□□□ 1.3
PTPN4-211ENST00000488279 CHD6Q8TD26 2715 aa23.14■■□□□ 1.3
PTPN4-211ENST00000488279 K7ERQ8 282 aa23.14■■□□□ 1.29
PTPN4-211ENST00000488279 ENDOD1O94919 500 aa23.14■■□□□ 1.29
PTPN4-211ENST00000488279 CYP1A1P04798 512 aaPredicted RBP23.14■■□□□ 1.29
PTPN4-211ENST00000488279 MMP8P22894 467 aa23.14■■□□□ 1.29
PTPN4-211ENST00000488279 MAT2AP31153 395 aaKnown RBP23.14■■□□□ 1.29
PTPN4-211ENST00000488279 CLCN6P51797 869 aa23.14■■□□□ 1.29
PTPN4-211ENST00000488279 JAM2P57087 298 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms