RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 ITGA7Q13683 1181 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 PAFAH1B3Q15102 231 aaKnown RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 ARL13AQ5H913 290 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 SH2D4BQ5SQS7 431 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 NOL9Q5SY16 702 aaKnown RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 LIPMQ5VYY2 423 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 IYDQ6PHW0 289 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 UNC93AQ86WB7 457 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 ALDH16A1Q8IZ83 802 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 RDH11Q8TC12 318 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 STON2Q8WXE9 905 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 USP13Q92995 863 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 DNAJC1Q96KC8 554 aaKnown RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 PRPF18Q99633 342 aaKnown RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 ACE2Q9BYF1 805 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 NUF2Q9BZD4 464 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 SENP6Q9GZR1 1112 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-206ENST00000487010 IL22Q9GZX6 179 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 WDR41Q9HAD4 459 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 HES2Q9Y543 173 aa12.44□□□□□ -0.42
COL3A1-206ENST00000487010 HCRTO43612 131 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 USP12O75317 370 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 AP2A1O95782 977 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 INSRRP14616 1297 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 MATKP42679 507 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 ACADSBP45954 432 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 CCR10P46092 362 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 SULT1E1P49888 294 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 PRKAA2P54646 552 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 CSE1LP55060 971 aaKnown RBP12.43□□□□□ -0.42
COL3A1-206ENST00000487010 USP46P62068 366 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 MPP3Q13368 585 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 ART3Q13508 389 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 RFTN1Q14699 578 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-206ENST00000487010 SLC25A52Q3SY17 297 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 ZNF484Q5JVG2 852 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 DEFB106AQ8N104 65 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 GALNT4Q8N4A0 578 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 TMEM151AQ8N4L1 468 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 ACVR1CQ8NER5 493 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 PDCD6IPQ8WUM4 868 aaKnown RBP12.43□□□□□ -0.42
COL3A1-206ENST00000487010 CATSPER2Q96P56 530 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 MPHOSPH6Q99547 160 aaKnown RBP12.43□□□□□ -0.42
COL3A1-206ENST00000487010 MCMBPQ9BTE3 642 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 SLC2A11Q9BYW1 496 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 CXCL16Q9H2A7 254 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 R3HDMLQ9H3Y0 253 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 EFCAB1Q9HAE3 211 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 PREBQ9HCU5 417 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 CASS4Q9NQ75 786 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 ACSS2Q9NR19 701 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 TMPRSS4Q9NRS4 437 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 PIM2Q9P1W9 311 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 KLHL8Q9P2G9 620 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-206ENST00000487010 VTI1BQ9UEU0 232 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 ZDHHC2Q9UIJ5 367 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 PADI4Q9UM07 663 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 AKT3Q9Y243 479 aa12.43□□□□□ -0.42
COL3A1-206ENST00000487010 MYOCOSA0A1B0GUC4 107 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 ARHGAP10A1A4S6 786 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 SLCO1B7G3V0H7 640 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 ACOT8O14734 319 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 TSPAN1O60635 241 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 TADA2AO75478 443 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 VTNP04004 478 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 PGK2P07205 417 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 SBK3P0C264 359 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 CSRP3P50461 194 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 EN1Q05925 392 aaPredicted RBP12.42□□□□□ -0.42
COL3A1-206ENST00000487010 NSUN2Q08J23 767 aaKnown RBP eCLIP12.42□□□□□ -0.42
COL3A1-206ENST00000487010 PRKAA1Q13131 559 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 TMEM198Q66K66 360 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 BORAQ6PGQ7 559 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 ZNF410Q86VK4 478 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 KCNMB4Q86W47 210 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 TP53INP2Q8IXH6 220 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 RNF148Q8N7C7 305 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 LINC01465Q8N7H1 131 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 TMEM102Q8N9M5 508 aaPredicted RBP12.42□□□□□ -0.42
COL3A1-206ENST00000487010 ADAM32Q8TC27 787 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 MFSD3Q96ES6 412 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 VPS39Q96JC1 886 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 KLHL32Q96NJ5 620 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 C1QTNF1Q9BXJ1 281 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 TASP1Q9H6P5 420 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 ZBTB26Q9HCK0 441 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 ERAP1Q9NZ08 941 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 CNOT11Q9UKZ1 510 aaKnown RBP12.42□□□□□ -0.42
COL3A1-206ENST00000487010 CDYLQ9Y232 598 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 ANKRD6Q9Y2G4 727 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 STX16-NPEPL1H3BU86 382 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 TK2O00142 265 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 KCNK1O00180 336 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 HNRNPRO43390 633 aaKnown RBP12.42□□□□□ -0.42
COL3A1-206ENST00000487010 CABYRO75952 493 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 PTPN3P26045 913 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 HADHAP40939 763 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 GRM5P41594 1212 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 NR1H2P55055 460 aa12.42□□□□□ -0.42
COL3A1-206ENST00000487010 HPCAP84074 193 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms