RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	TRHDE	Q9UKU6	1024 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	SHOC2	Q9UQ13	582 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	TBC1D30	Q9Y2I9	924 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	TRANK1	O15050	2925 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	NYNRIN	Q9P2P1	1898 aa	Known RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	ILVBL	A1L0T0	632 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	TYW5	A2RUC4	315 aa	Known RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	MAP2K7	O14733	419 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	CHAD	O15335	359 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	PPFIA2	O75334	1257 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	PEX11B	O96011	259 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	FDFT1	P37268	417 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	PMS2	P54278	862 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	IFI35	P80217	286 aa	Predicted RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	DLX2	Q07687	328 aa	Predicted RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	RNF219	Q5W0B1	726 aa	Predicted RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	CXorf57	Q6NSI4	855 aa	Known RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	EP400NL	Q6ZTU2	488 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	GET4	Q7L5D6	327 aa	Predicted RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	NPAS3	Q8IXF0	933 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	MREG	Q8N565	214 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	ZCCHC9	Q8N567	271 aa	Known RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	ST13P5	Q8NFI4	369 aa	Predicted RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	MAML1	Q92585	1016 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	FGF13	Q92913	245 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	PABPC5	Q96DU9	382 aa	Known RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	ZNF419	Q96HQ0	510 aa	Predicted RBP	11.45	□□□□□ -0.58
APTX-223	ENST00000479656	LRRC3B	Q96PB8	259 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	IL12RB2	Q99665	862 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	SEMA4A	Q9H3S1	761 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	IGSF9	Q9P2J2	1179 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	RSPH14	Q9UHP6	348 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	MTCH2	Q9Y6C9	303 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656	MYO9B	Q13459	2157 aa		11.45	□□□□□ -0.58
APTX-223	ENST00000479656		E7EVH7	732 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	LUC7L3	O95232	432 aa	Known RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	HOXB8	P17481	243 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	NFKB1	P19838	968 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	HSD17B3	P37058	310 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	VIPR2	P41587	438 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	IL10RB	Q08334	325 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	SLC10A7	Q0GE19	358 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MTM1	Q13496	603 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	SEMA5A	Q13591	1074 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	HNRNPD	Q14103	355 aa	Known RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ADGRE1	Q14246	886 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	SLMAP	Q14BN4	828 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ANO4	Q32M45	955 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	FAM78A	Q5JUQ0	283 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	FNBP1L	Q5T0N5	605 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	OTOP3	Q7RTS5	596 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	TMEM25	Q86YD3	366 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	CELF5	Q8N6W0	485 aa	Known RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	PDCD7	Q8N8D1	485 aa	Known RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	WFDC5	Q8TCV5	224 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	SHROOM3	Q8TF72	1996 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	UBLCP1	Q8WVY7	318 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	EXOC4	Q96A65	974 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	RSPRY1	Q96DX4	576 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	RBM15	Q96T37	977 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MUC3B	Q9H195	1237 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	CLEC4E	Q9ULY5	219 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	WNT6	Q9Y6F9	365 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	C2orf16	Q68DN1	1984 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	SMAP	O00193	183 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ATP8B1	O43520	1251 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	KDELR3	O43731	214 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	PRAMEF11	O60813	436 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	NEBL	O76041	1014 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	CYBB	P04839	570 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	TCF3	P15923	654 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	IGFBP4	P22692	258 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	GLDC	P23378	1020 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	HOXD9	P28356	352 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MZF1	P28698	734 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MAGEA6	P43360	314 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	LMAN1	P49257	510 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	RENBP	P51606	427 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MLLT1	Q03111	559 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	USP4	Q13107	963 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	CDH18	Q13634	790 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	UAP1	Q16222	522 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ATAT1	Q5SQI0	421 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MPP7	Q5T2T1	576 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MARC1	Q5VT66	337 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	FYB2	Q5VWT5	728 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ITPRIPL1	Q6GPH6	555 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	MFN1	Q8IWA4	741 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ADGRG2	Q8IZP9	1017 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	NSMCE1	Q8WV22	266 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ASB16	Q96NS5	453 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	GORASP1	Q9BQQ3	440 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ACE2	Q9BYF1	805 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-223	ENST00000479656	FOXP3	Q9BZS1	431 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	TSPYL1	Q9H0U9	437 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	GBA3	Q9H227	469 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	S1PR5	Q9H228	398 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ATP13A1	Q9HD20	1204 aa		11.44	□□□□□ -0.58

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