RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 DFFAO00273 331 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 NEMP1O14524 444 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 MSI1O43347 362 aaKnown RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 DCXO43602 365 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 CIB2O75838 187 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 CELF2O95319 508 aaKnown RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 SKIP12755 728 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 CNTFP26441 200 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 RAP1GDS1P52306 607 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 ABCE1P61221 599 aaKnown RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 MRPS35P82673 323 aaKnown RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 MAP2K5Q13163 448 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 MORN1Q5T089 497 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 KCTD11Q693B1 232 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 TAC4Q86UU9 113 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 LRRTM3Q86VH5 581 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 ZSCAN18Q8TBC5 510 aaPredicted RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 SLC26A7Q8TE54 656 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 RNF34Q969K3 372 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 MYLPFQ96A32 169 aa11.03□□□□□ -0.64
VPS52-217ENST00000478934 PARK7Q99497 189 aaKnown RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 ZNF184Q99676 751 aaPredicted RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 AGO3Q9H9G7 860 aaKnown RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 APOBEC2Q9Y235 224 aaKnown RBP11.03□□□□□ -0.64
VPS52-217ENST00000478934 RALGAPA2Q2PPJ7 1873 aa11.02□□□□□ -0.64
VPS52-217ENST00000478934 TK2O00142 265 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 ZBTB14O43829 449 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 TOMM70O94826 608 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 ITGB1P05556 798 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 C2P06681 752 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 GARSP41250 739 aaKnown RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 PURAQ00577 322 aaKnown RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 CDC42EP1Q00587 391 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 PPIDQ08752 370 aaKnown RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 GRM3Q14832 879 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 NOMO2Q5JPE7 1267 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 FAM91A1Q658Y4 838 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 ZNF280DQ6N043 979 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 AGMOQ6ZNB7 445 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 TMEM135Q86UB9 458 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 KCNMB4Q86W47 210 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 HPS6Q86YV9 775 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 ARHGAP24Q8N264 748 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 OR52B2Q96RD2 323 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 CPNE1Q99829 537 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 FTHL17Q9BXU8 183 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 MMADHCQ9H3L0 296 aaPredicted RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 WDR55Q9H6Y2 383 aaPredicted RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 LRRC40Q9H9A6 602 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 COG4Q9H9E3 785 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 CASS4Q9NQ75 786 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 FAM105AQ9NUU6 356 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 BFARQ9NZS9 450 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 SFMBT1Q9UHJ3 866 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 TTC3P53804 2025 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 LIN7AO14910 233 aaPredicted RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 MAGEC1O60732 1142 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 PGK1P00558 417 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 CHRNA1P02708 482 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 THP07101 528 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 GABRB3P28472 473 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 ACTR3P61158 418 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 CTBP1Q13363 440 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 POU6F1Q14863 301 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 FSCN1Q16658 493 aaKnown RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 SPANXN3Q5MJ09 141 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 GRTP1Q5TC63 336 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 OR52E8Q6IFG1 317 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 FRMD7Q6ZUT3 714 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 DENND6AQ8IWF6 608 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 URGCPQ8TCY9 931 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 ACMSDQ8TDX5 336 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 ZNF483Q8TF39 744 aaPredicted RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 APBB2Q92870 758 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 NDE1Q9NXR1 346 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 SOX13Q9UN79 622 aa11.02□□□□□ -0.65
VPS52-217ENST00000478934 RPL26L1Q9UNX3 145 aaKnown RBP11.02□□□□□ -0.65
VPS52-217ENST00000478934 ARSAP15289 507 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 MPSTP25325 297 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 LIMK2P53671 638 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 GRIK3Q13003 919 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 CUL3Q13618 768 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 PDPK2PQ6A1A2 396 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 GDF6Q6KF10 455 aaPredicted RBP11.01□□□□□ -0.65
VPS52-217ENST00000478934 NET1Q7Z628 596 aaPredicted RBP11.01□□□□□ -0.65
VPS52-217ENST00000478934 MYLK4Q86YV6 388 aaPredicted RBP11.01□□□□□ -0.65
VPS52-217ENST00000478934 DEFB107AQ8IZN7 70 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 RAB3IL1Q8TBN0 382 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 MARK4Q96L34 752 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 AP5M1Q9H0R1 490 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 GBA3Q9H227 469 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 EBF3Q9H4W6 596 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 ZNF212Q9UDV6 495 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 SLC2A6Q9UGQ3 507 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 INPP5FQ9Y2H2 1132 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 SLC45A1Q9Y2W3 748 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 TTC24A2A3L6 582 aaPredicted RBP11.01□□□□□ -0.65
VPS52-217ENST00000478934 MGEA5O60502 916 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 B3GAT3O94766 335 aa11.01□□□□□ -0.65
VPS52-217ENST00000478934 JUNP05412 331 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms