RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 TLR1Q15399 786 aa21.52■■□□□ 1.04
COL18A1-207ENST00000473212 KIAA0319Q5VV43 1072 aa21.52■■□□□ 1.04
COL18A1-207ENST00000473212 PQLC1Q8N2U9 271 aa21.52■■□□□ 1.04
COL18A1-207ENST00000473212 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.52■■□□□ 1.041e-12■■■■□ 20.4
COL18A1-207ENST00000473212 LENG1Q96BZ8 264 aaPredicted RBP21.52■■□□□ 1.04
COL18A1-207ENST00000473212 BTBD9Q96Q07 612 aa21.52■■□□□ 1.04
COL18A1-207ENST00000473212 GATA5Q9BWX5 397 aaPredicted RBP21.52■■□□□ 1.04
COL18A1-207ENST00000473212 UNKQ9C0B0 810 aaKnown RBP21.52■■□□□ 1.04
COL18A1-207ENST00000473212 LRRC40Q9H9A6 602 aa21.52■■□□□ 1.04
COL18A1-207ENST00000473212 PSMD13Q9UNM6 376 aa21.52■■□□□ 1.04
COL18A1-207ENST00000473212 EEF2KO00418 725 aaKnown RBP21.52■■□□□ 1.03
COL18A1-207ENST00000473212 ZBTB24O43167 697 aaPredicted RBP21.52■■□□□ 1.03
COL18A1-207ENST00000473212 TRIM13O60858 407 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 PTPN3P26045 913 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 MSX2P35548 267 aaPredicted RBP21.52■■□□□ 1.03
COL18A1-207ENST00000473212 SNX32Q86XE0 403 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 DCUN1D1Q96GG9 259 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 NDNQ99608 321 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 PLEKHA5Q9HAU0 1116 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 NMRAL1Q9HBL8 299 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 CHRAC1Q9NRG0 131 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 TMEM30AQ9NV96 361 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 IGSF9Q9P2J2 1179 aa21.52■■□□□ 1.03
COL18A1-207ENST00000473212 RCOR3Q9P2K3 495 aaPredicted RBP21.52■■□□□ 1.03
COL18A1-207ENST00000473212 ZCWPW2A0A1B0GU75 182 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 TMEM114B3SHH9 223 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 FYNP06241 537 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 C2P06681 752 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 ERCC2P18074 760 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 LSAMPQ13449 338 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 SNAPC2Q13487 334 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 LAMB3Q13751 1172 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 DPYSQ14117 519 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 METTL21CQ5VZV1 264 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 DNAAF3Q8N9W5 541 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 B3GALNT2Q8NCR0 500 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 APPL2Q8NEU8 664 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 URGCPQ8TCY9 931 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 STK39Q9UEW8 545 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 VANGL2Q9ULK5 521 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 PIN4Q9Y237 131 aaKnown RBP21.51■■□□□ 1.03
COL18A1-207ENST00000473212 TRIP12Q14669 1992 aaPredicted RBP21.51■■□□□ 1.03
COL18A1-207ENST00000473212 FBXO21O94952 628 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 MMP3P08254 477 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 EPHA3P29320 983 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 CD68P34810 354 aaPredicted RBP21.51■■□□□ 1.03
COL18A1-207ENST00000473212 ZBTB17Q13105 803 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 EML3Q32P44 896 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 GPRIN1Q7Z2K8 1008 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 CLEC14AQ86T13 490 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 SLC7A14Q8TBB6 771 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 CDCA5Q96FF9 252 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 NPY6RQ99463 290 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 MLPHQ9BV36 600 aaPredicted RBP21.51■■□□□ 1.03
COL18A1-207ENST00000473212 CLIC5Q9NZA1 410 aa21.51■■□□□ 1.03
COL18A1-207ENST00000473212 TK2O00142 265 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 DCLK1O15075 740 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 SPATA31D3P0C874 917 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 THRAP10827 490 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 SCNN1AP37088 669 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 NUMBP49757 651 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 MAP3K7CLP57077 242 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 FAM219BQ5XKK7 198 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 SPATA31D4Q6ZUB0 917 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 CDRT15Q96T59 188 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 ILKAPQ9H0C8 392 aaPredicted RBP21.5■■□□□ 1.03
COL18A1-207ENST00000473212 MPOP05164 745 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 THOP1P52888 689 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 RPL26P61254 145 aaKnown RBP21.5■■□□□ 1.03
COL18A1-207ENST00000473212 MRPS22P82650 360 aaKnown RBP21.5■■□□□ 1.03
COL18A1-207ENST00000473212 ZNF410Q86VK4 478 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 DSELQ8IZU8 1212 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 SREK1Q8WXA9 508 aaKnown RBP21.5■■□□□ 1.03
COL18A1-207ENST00000473212 NMD3Q96D46 503 aaKnown RBP21.5■■□□□ 1.03
COL18A1-207ENST00000473212 HSFY1Q96LI6 401 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 EPAS1Q99814 870 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 BFARQ9NZS9 450 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 C6orf203Q9P0P8 240 aaPredicted RBP21.5■■□□□ 1.03
COL18A1-207ENST00000473212 UBQLN1Q9UMX0 589 aaKnown RBP21.5■■□□□ 1.03
COL18A1-207ENST00000473212 PCDHGB4Q9UN71 923 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 PCDHGB5Q9Y5G0 923 aa21.5■■□□□ 1.03
COL18A1-207ENST00000473212 YJEFN3A6XGL0 299 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 SMIM18P0DKX4 95 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 PMLP29590 882 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 ACADSBP45954 432 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 GLRBP48167 497 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 LSM12Q3MHD2 195 aaKnown RBP21.49■■□□□ 1.03
COL18A1-207ENST00000473212 NOTUMQ6P988 496 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 CLEC20AQ6ZU45 233 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 TMEM135Q86UB9 458 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 SPATA24Q86W54 205 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 PSTKQ8IV42 348 aaKnown RBP21.49■■□□□ 1.03
COL18A1-207ENST00000473212 KYQ8NBH2 561 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 PIP4K2CQ8TBX8 421 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 UBAP1Q9NZ09 502 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 TIMM13Q9Y5L4 95 aaPredicted RBP21.49■■□□□ 1.03
COL18A1-207ENST00000473212 COL1A2P08123 1366 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 RGSL1A5PLK6 1076 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 MEIS3P2A8K0S8 358 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 XPO1O14980 1071 aaKnown RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms