RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CERS4Q9HA82 394 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 NDFIP2Q9NV92 336 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 CFAP97Q9P2B7 532 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 RSPH14Q9UHP6 348 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 PLAAQ9Y263 795 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 GOLGA6L10A6NI86 522 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 LEFTY2O00292 366 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 GFRA2O00451 464 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 ALOX15BO15296 676 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 RIPK2O43353 540 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 GREM1O60565 184 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 MOSPD3O75425 235 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 SPAG6O75602 509 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 ANXA9O76027 345 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TMEM63AO94886 807 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 METTL18O95568 372 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 RHOCP08134 193 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 CCR2P41597 374 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 IRAK1P51617 712 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 NRLP54845 237 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 GNA12Q03113 381 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TNK2Q07912 1038 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 SERINC3Q13530 473 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 KCNC3Q14003 757 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TEAD2Q15562 447 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 UAP1Q16222 522 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 KCTD19Q17RG1 926 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 MPPE1Q53F39 396 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 ANKRD22Q5VYY1 191 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TMEM184AQ6ZMB5 413 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 GRASPQ7Z6J2 395 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF354CQ86Y25 554 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 ARHGEF2Q92974 986 aaKnown RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF707Q96C28 371 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 OTUB2Q96DC9 234 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TMA16Q96EY4 203 aaKnown RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 HMCESQ96FZ2 354 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 PRICKLE1Q96MT3 831 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 ZIM3Q96PE6 472 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 NSUN3Q9H649 340 aaKnown RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 SAYSD1Q9NPB0 183 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TDP1Q9NUW8 608 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 FAM53CQ9NYF3 392 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 OGFRQ9NZT2 677 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TBC1D14Q9P2M4 693 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 TBC1D30Q9Y2I9 924 aa13.1□□□□□ -0.31
VPS13D-205ENST00000473099 AAR2Q9Y312 384 aaKnown RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 MRPS23Q9Y3D9 190 aaKnown RBP13.1□□□□□ -0.31
VPS13D-205ENST00000473099 MYLKQ15746 1914 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 SLC9A3R1O14745 358 aaPredicted RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 CACNG3O60359 315 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 JCHAINP01591 159 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 CYBBP04839 570 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 GJA1P17302 382 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 PSMB4P28070 264 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 PHBP35232 272 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 RPS24P62847 133 aaKnown RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 IFFO1Q0D2I5 559 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 PDIA2Q13087 525 aaKnown RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 ZBTB17Q13105 803 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 RFTN1Q14699 578 aaPredicted RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 CCDC38Q502W7 563 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 MARC1Q5VT66 337 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 LINC00523Q86TU6 105 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 KLHDC8BQ8IXV7 354 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 KRT222Q8N1A0 295 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 CFAP52Q8N1V2 620 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 TDRD5Q8NAT2 981 aaKnown RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 ATP11CQ8NB49 1132 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 NETO2Q8NC67 525 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 ZSCAN18Q8TBC5 510 aaPredicted RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 SH3RF2Q8TEC5 729 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 PYROXD1Q8WU10 500 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 LRRN4Q8WUT4 740 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 DEPDC1BQ8WUY9 529 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 WBP2Q969T9 261 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 TCEAL4Q96EI5 215 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 AGAP3Q96P47 875 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 SERPINB12Q96P63 405 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 FCRL5Q96RD9 977 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 CCDC77Q9BR77 488 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 TMEM109Q9BVC6 243 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 ROPN1BQ9BZX4 212 aaPredicted RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 SEMA4AQ9H3S1 761 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 LRRC40Q9H9A6 602 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 PPCSQ9HAB8 311 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 ROPN1Q9HAT0 212 aaPredicted RBP13.09□□□□□ -0.31
VPS13D-205ENST00000473099 LMCD1Q9NZU5 365 aa13.09□□□□□ -0.31
VPS13D-205ENST00000473099 CXorf51AA0A1B0GTR3 108 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 TCRBV7S3A2A0A539 114 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 H0Y626 953 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 GOLGA8MH3BSY2 632 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 ZBTB24O43167 697 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-205ENST00000473099 PRAMEF11O60813 436 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 TBL1XO60907 577 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 SUN1O94901 812 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 LUC7L3O95232 432 aaKnown RBP13.08□□□□□ -0.32
VPS13D-205ENST00000473099 AP2A1O95782 977 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 IVLP07476 585 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 GSTA2P09210 222 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms