RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CSNK1G1Q9HCP0 422 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 SLC2A6Q9UGQ3 507 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 SLC7A8Q9UHI5 535 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 TAGLN3Q9UI15 199 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 TTC24A2A3L6 582 aaPredicted RBP19.46■□□□□ 0.71
VIM-203ENST00000469543 ZNF195O14628 629 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 SERPINE1P05121 402 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 CHRNGP07510 517 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 NCF2P19878 526 aaPredicted RBP19.46■□□□□ 0.71
VIM-203ENST00000469543 LIMK2P53671 638 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 CRHR2Q13324 411 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 CCDC6Q16204 474 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 GRTP1Q5TC63 336 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 PDZD4Q76G19 769 aaPredicted RBP19.46■□□□□ 0.71
VIM-203ENST00000469543 TMPRSS6Q8IU80 811 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 URGCPQ8TCY9 931 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 CASP10Q92851 521 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 PGAP3Q96FM1 320 aaPredicted RBP19.46■□□□□ 0.71
VIM-203ENST00000469543 TUBB6Q9BUF5 446 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 PLA2G4CQ9UP65 541 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 G3V2L1 256 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 HNRNPCL1O60812 293 aaKnown RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 USP1O94782 785 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 CCNG1P51959 295 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 SNX30Q5VWJ9 437 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 FAM171BQ6P995 826 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 VPS39Q96JC1 886 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 PANX3Q96QZ0 392 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 NEU3Q9UQ49 428 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 LRRC42Q9Y546 428 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 GOLGA8QA0A0J9YX86 632 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 GOLGA8OA6NCC3 632 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 GOLGA8NF8WBI6 632 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 DUSP11O75319 330 aaKnown RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 PAGE1O75459 146 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 PSMG1O95456 288 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 PCSK1P29120 753 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 SPRP35270 261 aaPredicted RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 CHRNA4P43681 627 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 MPP3Q13368 585 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 INTS6LQ5JSJ4 861 aaKnown RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 RABGAP1LQ5R372 815 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 PM20D1Q6GTS8 502 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 RAPH1Q70E73 1250 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 SERINC5Q86VE9 423 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 RASAL3Q86YV0 1011 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 TSPAN18Q96SJ8 248 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 MTG1Q9BT17 334 aaPredicted RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 NMUR1Q9HB89 426 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 TRMT13Q9NUP7 481 aaKnown RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 NMRK1Q9NWW6 199 aa19.45■□□□□ 0.7
VIM-203ENST00000469543 G3BP2Q9UN86 482 aaKnown RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 APOBEC2Q9Y235 224 aaKnown RBP19.45■□□□□ 0.7
VIM-203ENST00000469543 E9PBE3 544 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 KLHL41O60662 606 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 PMPCBO75439 489 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 VAPBO95292 243 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 HCAR3P49019 387 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 ABCE1P61221 599 aaKnown RBP19.44■□□□□ 0.7
VIM-203ENST00000469543 CAP1Q01518 475 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 ZNF280DQ6N043 979 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 ULK2Q8IYT8 1036 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 OSBPL1AQ9BXW6 950 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 SLC39A8Q9C0K1 460 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 YY1AP1Q9H869 796 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 COG4Q9H9E3 785 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 CYP4F11Q9HBI6 524 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 OSER1Q9NX31 292 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 PACSIN3Q9UKS6 424 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 PTCH2Q9Y6C5 1203 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 SPECC1L-ADORA2AF8WAN1 911 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 F9P00740 461 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 AHSGP02765 367 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 GRIK1P39086 918 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 GPR15P49685 360 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 MPP1Q00013 466 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 SLC9B1Q4ZJI4 515 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 ESRP1Q6NXG1 681 aaKnown RBP19.44■□□□□ 0.7
VIM-203ENST00000469543 C14orf80Q86SX3 495 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 SCUBE1Q8IWY4 988 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.44■□□□□ 0.76e-7■■■■■ 139.2
VIM-203ENST00000469543 TRPM7Q96QT4 1865 aa19.44■□□□□ 0.7
VIM-203ENST00000469543 NCAM2O15394 837 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 DCXO43602 365 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 ASGR1P07306 291 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 CPOXP36551 454 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 SLC5A3P53794 718 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 OVOS1Q6IE37 1185 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 RIPOR1Q6ZS17 1223 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 ARHGAP12Q8IWW6 846 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 RAB3IL1Q8TBN0 382 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 FCRL2Q96LA5 508 aaPredicted RBP19.43■□□□□ 0.7
VIM-203ENST00000469543 OMDQ99983 421 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 ACBD6Q9BR61 282 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 WDR55Q9H6Y2 383 aaPredicted RBP19.43■□□□□ 0.7
VIM-203ENST00000469543 GIT1Q9Y2X7 761 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 Q9Y3F1 56 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 AURKAO14965 403 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 IGHA2P01877 340 aa19.43■□□□□ 0.7
VIM-203ENST00000469543 ODC1P11926 461 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms