RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SLCO6A1Q86UG4 719 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 XYLT1Q86Y38 959 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 GALNT15Q8N3T1 639 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 OXR1Q8N573 874 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 SH2D3CQ8N5H7 860 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 KDM4CQ9H3R0 1056 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 FAM207AQ9NSI2 230 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-206ENST00000466591 SEPT11Q9NVA2 429 aaKnown RBP17.97■□□□□ 0.47
COL7A1-206ENST00000466591 ARHGEF38Q9NXL2 777 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 BTBD3Q9Y2F9 522 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 SNX10Q9Y5X0 201 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 A0A1B0GTQ1 180 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 E9PAM4 449 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 CBX4O00257 560 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 MCF2LO15068 1137 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 CNTN5O94779 1100 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 CDH5P33151 784 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-206ENST00000466591 NUDT1P36639 197 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 DNA2P51530 1060 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 POLR2FP61218 127 aaKnown RBP17.96■□□□□ 0.47
COL7A1-206ENST00000466591 ATP11AP98196 1134 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 KCNMA1Q12791 1236 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 CNTN1Q12860 1018 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 RETSATQ6NUM9 610 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 SETD3Q86TU7 594 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-206ENST00000466591 NOP9Q86U38 636 aaKnown RBP17.96■□□□□ 0.47
COL7A1-206ENST00000466591 FAM131BQ86XD5 332 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 ZNF677Q86XU0 584 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 GATAD2AQ86YP4 633 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 FRS2Q8WU20 508 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 PPP1R16AQ96I34 528 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 CFAP57Q96MR6 1250 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 CCDC86Q9H6F5 360 aaKnown RBP17.96■□□□□ 0.47
COL7A1-206ENST00000466591 METTL5Q9NRN9 209 aaKnown RBP17.96■□□□□ 0.47
COL7A1-206ENST00000466591 MPP6Q9NZW5 540 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 TBC1D30Q9Y2I9 924 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 PCNX2A6NKB5 2137 aa17.96■□□□□ 0.47
COL7A1-206ENST00000466591 SRRM3A6NNA2 597 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-206ENST00000466591 TLR4O00206 839 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 SNAP91O60641 907 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 PRNPP04156 253 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 TFE3P19532 575 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-206ENST00000466591 CDK11BP21127 795 aaKnown RBP17.95■□□□□ 0.46
COL7A1-206ENST00000466591 SDC4P31431 198 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 GABRB2P47870 512 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 PPP2CBP62714 309 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 PPP2CAP67775 309 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 SCAPQ12770 1279 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 ALFQ53S48 1182 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 KCNT1Q5JUK3 1230 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 RWDD4Q6NW29 188 aaKnown RBP17.95■□□□□ 0.46
COL7A1-206ENST00000466591 ZNF354CQ86Y25 554 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 RYBPQ8N488 228 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-206ENST00000466591 DCAF4L2Q8NA75 395 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 GRIN3AQ8TCU5 1115 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 PGAP3Q96FM1 320 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-206ENST00000466591 TMEM121BQ9BXQ6 578 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-206ENST00000466591 ZYG11BQ9C0D3 744 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 ATP13A1Q9HD20 1204 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 NLRC4Q9NPP4 1024 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 VPS51Q9UID3 782 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 DMTF1Q9Y222 760 aa17.95■□□□□ 0.46
COL7A1-206ENST00000466591 PLRG1O43660 514 aaKnown RBP17.94■□□□□ 0.46
COL7A1-206ENST00000466591 ENDOD1O94919 500 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 PCDH8O95206 1070 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 LDOC1O95751 146 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-206ENST00000466591 SRCP12931 536 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 DESP17661 470 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 RRM1P23921 792 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 CHRNA3P32297 505 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 DRD3P35462 400 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 FLT3P36888 993 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 STAT1P42224 750 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 VASPP50552 380 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-206ENST00000466591 CLCN6P51797 869 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 LINGO4Q6UY18 593 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 PHLDB2Q86SQ0 1253 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 DRC7Q8IY82 874 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 NEK11Q8NG66 645 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 OR52K2Q8NGK3 314 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 ENOX1Q8TC92 643 aaKnown RBP17.94■□□□□ 0.46
COL7A1-206ENST00000466591 EPS8L1Q8TE68 723 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 CNDP2Q96KP4 475 aaKnown RBP17.94■□□□□ 0.46
COL7A1-206ENST00000466591 C1orf74Q96LT6 269 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 MYOCQ99972 504 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 ORAI3Q9BRQ5 295 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 PREBQ9HCU5 417 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 SARDHQ9UL12 918 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 PPM1HQ9ULR3 514 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 HS3ST2Q9Y278 367 aa17.94■□□□□ 0.46
COL7A1-206ENST00000466591 NYNRINQ9P2P1 1898 aaKnown RBP17.94■□□□□ 0.46
COL7A1-206ENST00000466591 CEP295Q9C0D2 2601 aa17.93■□□□□ 0.46
COL7A1-206ENST00000466591 PLXNA2O75051 1894 aa17.93■□□□□ 0.46
COL7A1-206ENST00000466591 TMEM131Q92545 1883 aa17.93■□□□□ 0.46
COL7A1-206ENST00000466591 FAM221BA6H8Z2 402 aa17.93■□□□□ 0.46
COL7A1-206ENST00000466591 ANKRD62A6NC57 917 aa17.93■□□□□ 0.46
COL7A1-206ENST00000466591 PRAMEF26H0Y7S4 382 aa17.93■□□□□ 0.46
COL7A1-206ENST00000466591 RNGTTO60942 597 aaKnown RBP17.93■□□□□ 0.46
COL7A1-206ENST00000466591 SOX5P35711 763 aa17.93■□□□□ 0.46
COL7A1-206ENST00000466591 NSFP46459 744 aaKnown RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms