RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NPY2RP49146 381 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 IDH3AP50213 366 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MPP3Q13368 585 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 CCDC6Q16204 474 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 CCDC153Q494R4 210 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 RABGAP1LQ5R372 815 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 NAPRTQ6XQN6 538 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MRPL10Q7Z7H8 261 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 METTL23Q86XA0 190 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MAB21L3Q8N8X9 362 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 URGCPQ8TCY9 931 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 PPP4R1Q8TF05 950 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 IRGQQ8WZA9 623 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 VAT1Q99536 393 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 PKMYT1Q99640 499 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 IL22Q9GZX6 179 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 DMAP1Q9NPF5 467 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ACSS2Q9NR19 701 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 SFMBT1Q9UHJ3 866 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 NUDT5Q9UKK9 219 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 ADAM28Q9UKQ2 775 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 SOX13Q9UN79 622 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 NEU3Q9UQ49 428 aa9.12□□□□□ -0.95
SYNE1-217ENST00000466159 APOBEC2Q9Y235 224 aaKnown RBP9.12□□□□□ -0.95
SYNE1-217ENST00000466159 MAGEB16A2A368 324 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 G3V2L1 256 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 MSI1O43347 362 aaKnown RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 MAGEC1O60732 1142 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SIN3BO75182 1162 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 TBX10O75333 385 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 AOC1P19801 751 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SAT1P21673 171 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 RAP1GDS1P52306 607 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 MXRA7P84157 204 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 CDH17Q12864 832 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 USP4Q13107 963 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 CLEC14AQ86T13 490 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SCUBE1Q8IWY4 988 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 POU5F2Q8N7G0 328 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 OR6Y1Q8NGX8 325 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SHKBP1Q8TBC3 707 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 NRG4Q8WWG1 115 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SOCS4Q8WXH5 440 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 VPS39Q96JC1 886 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SIKE1Q9BRV8 207 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 FAM167BQ9BTA0 163 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 NDFIP2Q9NV92 336 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 CPSF2Q9P2I0 782 aaKnown RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 MANSC4A6NHS7 340 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 KPNA6O60684 536 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF189O75820 626 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 TM7SF2O76062 418 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 IGLV3-25P01717 112 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 CYP11A1P05108 521 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 ATP5BP06576 529 aaKnown RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 ABL2P42684 1182 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 HARS2P49590 506 aaKnown RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 EIF4EBP2Q13542 120 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-217ENST00000466159 PRPSAP1Q14558 356 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 GRM3Q14832 879 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 TBCCQ15814 346 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 NAPEPLDQ6IQ20 393 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 IFNL1Q8IU54 200 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 ARHGAP12Q8IWW6 846 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 ULK2Q8IYT8 1036 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 ARHGAP24Q8N264 748 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF781Q8N8C0 355 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 AGR3Q8TD06 166 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 MCMBPQ9BTE3 642 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SHCBP1LQ9BZQ2 653 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 OSBPL2Q9H1P3 480 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 STOML1Q9UBI4 398 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 SLC39A10Q9ULF5 831 aa9.11□□□□□ -0.95
SYNE1-217ENST00000466159 HTTP42858 3142 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 IRAK2O43187 625 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF623O75123 536 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 PAGE1O75459 146 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 MPOP05164 745 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 CPOXP36551 454 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF135P52742 658 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-217ENST00000466159 SLC25A3Q00325 362 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ITGA7Q13683 1181 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 FRG1Q14331 258 aaKnown RBP9.1□□□□□ -0.95
SYNE1-217ENST00000466159 POU6F1Q14863 301 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 SNX30Q5VWJ9 437 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 OVOS1Q6IE37 1185 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 IPMKQ8NFU5 416 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 RSPH1Q8WYR4 309 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 CASP10Q92851 521 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 STMN2Q93045 179 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 PANX3Q96QZ0 392 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ADAM2Q99965 735 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 SLC39A8Q9C0K1 460 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 NMRAL1Q9HBL8 299 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 MAN1C1Q9NR34 630 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 NMRK1Q9NWW6 199 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 DNAJC28Q9NX36 388 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ARHGEF38Q9NXL2 777 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 SLC7A8Q9UHI5 535 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms