RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 GOLGA8FQ08AF8 430 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 DLGAP5Q15398 846 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 MAP3K21Q5TCX8 1036 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 DENND1BQ6P3S1 775 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 CPOQ8IVL8 374 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.36□□□□□ -1.71
USP40-209ENST00000452724 DDIASQ8IXT1 998 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 SAMD14Q8IZD0 417 aaPredicted RBP4.36□□□□□ -1.71
USP40-209ENST00000452724 HERVK_113Q902F9 699 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 MASTLQ96GX5 879 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 POLR3GLQ9BT43 218 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 FRMD8Q9BZ67 464 aaPredicted RBP4.36□□□□□ -1.71
USP40-209ENST00000452724 FOXP1Q9H334 677 aaPredicted RBP4.36□□□□□ -1.71
USP40-209ENST00000452724 AAMDCQ9H7C9 122 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 IL21RQ9HBE5 538 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 Q9N2J8 555 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 TLR8Q9NR97 1041 aaKnown RBP4.36□□□□□ -1.71
USP40-209ENST00000452724 THSD1Q9NS62 852 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 LAMP3Q9UQV4 416 aa4.36□□□□□ -1.71
USP40-209ENST00000452724 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.36□□□□□ -1.71
USP40-209ENST00000452724 FOXO6A8MYZ6 492 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 NPHP1O15259 732 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 NCAM2O15394 837 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 KLK10O43240 276 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 ANP32CO43423 234 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 NEURL1O76050 574 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 HLA-DQA2P01906 255 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 LCKP06239 509 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 CYP2J2P51589 502 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 ARHGAP8P85298 464 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 PMPCAQ10713 525 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 MTX1Q13505 466 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 TTC39AQ5SRH9 613 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 VWA5B1Q5TIE3 1220 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 FAM171A1Q5VUB5 890 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 IRF2BP2Q7Z5L9 587 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 PIM3Q86V86 326 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 ZDHHC17Q8IUH5 632 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 TMEM217Q8N7C4 229 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 SLC44A5Q8NCS7 719 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 USP13Q92995 863 aaPredicted RBP4.35□□□□□ -1.71
USP40-209ENST00000452724 EME1Q96AY2 570 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 VCPIP1Q96JH7 1222 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 REEP2Q9BRK0 252 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 CADM1Q9BY67 442 aaKnown RBP4.35□□□□□ -1.71
USP40-209ENST00000452724 CTDSP1Q9GZU7 261 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 MSRB1Q9NZV6 116 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 UPB1Q9UBR1 384 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 CD207Q9UJ71 328 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 SUFUQ9UMX1 484 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 GDAQ9Y2T3 454 aa4.35□□□□□ -1.71
USP40-209ENST00000452724 LRRFIP2Q9Y608 721 aaKnown RBP4.35□□□□□ -1.71
USP40-209ENST00000452724 TTBK1Q5TCY1 1321 aaPredicted RBP4.35□□□□□ -1.71
USP40-209ENST00000452724 LY6G6EA0A0G2JKS1 128 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 TMEM247A6NEH6 219 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 RRN3P2A6NIE6 340 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 PEX12O00623 359 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 TLX3O43711 291 aaPredicted RBP4.34□□□□□ -1.71
USP40-209ENST00000452724 DHX16O60231 1041 aaKnown RBP4.34□□□□□ -1.71
USP40-209ENST00000452724 CNTFP26441 200 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 ME1P48163 572 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 CCR5P51681 352 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 SRSF1Q07955 248 aaKnown RBP eCLIP4.34□□□□□ -1.71
USP40-209ENST00000452724 BYSLQ13895 437 aaKnown RBP4.34□□□□□ -1.71
USP40-209ENST00000452724 SMTNL2Q2TAL5 461 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 AP5B1Q2VPB7 878 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 C5orf22Q49AR2 442 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 ALG10Q5BKT4 473 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 ALG10BQ5I7T1 473 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 PIK3CD-AS1Q5SR53 167 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 C6orf10Q5SRN2 563 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 ATG16L1Q676U5 607 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 BBS12Q6ZW61 710 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 B4GALNT4Q76KP1 1039 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 PIP4P1Q86T03 277 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 CCDC25Q86WR0 208 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 ARFGAP1Q8N6T3 406 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 STAMQ92783 540 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 RNFT2Q96EX2 444 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 ZNF419Q96HQ0 510 aaPredicted RBP4.34□□□□□ -1.71
USP40-209ENST00000452724 ZFYVE19Q96K21 471 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 WDR83Q9BRX9 315 aaKnown RBP4.34□□□□□ -1.71
USP40-209ENST00000452724 TRMOQ9BU70 441 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.34□□□□□ -1.71
USP40-209ENST00000452724 STN1Q9H668 368 aaKnown RBP4.34□□□□□ -1.71
USP40-209ENST00000452724 ZNF304Q9HCX3 659 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 SPAG4Q9NPE6 437 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 HEY2Q9UBP5 337 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 HS3ST3B1Q9Y662 390 aa4.34□□□□□ -1.71
USP40-209ENST00000452724 A0A0G2JK05 382 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 C17orf100A8MU93 164 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 H3BNX3 289 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 TULP3O75386 442 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 POLBP06746 335 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 WEE2P0C1S8 567 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 FCGR2AP12318 317 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 KLRC2P26717 231 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 TLE2Q04725 743 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 CHRNDQ07001 517 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 PLK5Q496M5 336 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms