RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 A0A088AWK7 358 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 M0QZ92 97 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 CELF2O95319 508 aaKnown RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 CHRNA1P02708 482 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 NMBRP28336 390 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 RPL9P32969 192 aaKnown RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 EIF4EBP2Q13542 120 aaPredicted RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 SCG3Q8WXD2 468 aaKnown RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 MEI4A8MW99 385 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 TIMM44O43615 452 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 CDH17Q12864 832 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 RSPH3Q86UC2 560 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 MYLK4Q86YV6 388 aaPredicted RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 DQX1Q8TE96 717 aaKnown RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 FAM136AQ96C01 138 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 VPS39Q96JC1 886 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 TSGA13Q96PP4 275 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 SENP6Q9GZR1 1112 aaPredicted RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 OSBPL2Q9H1P3 480 aa16.32■□□□□ 0.2
SHQ1-202ENST00000444040 IARS2Q9NSE4 1012 aaKnown RBP16.32■□□□□ 0.2
SHQ1-202ENST00000444040 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.31■□□□□ 0.2
SHQ1-202ENST00000444040 IGLV3-25P01717 112 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 BDNFP23560 247 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 MXRA7P84157 204 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 SLC25A3Q00325 362 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 ZNF33AQ06730 810 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 OTOP3Q7RTS5 596 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 SCML4Q8N228 414 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 ZNF781Q8N8C0 355 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 KIFC1Q9BW19 673 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 TMLHEQ9NVH6 421 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.31■□□□□ 0.2
SHQ1-202ENST00000444040 CTSHP09668 335 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 PDPK2PQ6A1A2 396 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 NAPEPLDQ6IQ20 393 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 MRPL10Q7Z7H8 261 aaKnown RBP16.31■□□□□ 0.2
SHQ1-202ENST00000444040 POU5F2Q8N7G0 328 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 PKMYT1Q99640 499 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 ACBD6Q9BR61 282 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 NMRAL1Q9HBL8 299 aa16.31■□□□□ 0.2
SHQ1-202ENST00000444040 A6NHS1 94 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 GOLGA8TH3BQL2 631 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 CIB2O75838 187 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 USP4Q13107 963 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 GDF6Q6KF10 455 aaPredicted RBP16.3■□□□□ 0.2
SHQ1-202ENST00000444040 CD300LGQ6UXG3 332 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 ARHGAP36Q6ZRI8 547 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 PAXIP1Q6ZW49 1069 aaPredicted RBP16.3■□□□□ 0.2
SHQ1-202ENST00000444040 TMEM151AQ8N4L1 468 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 SHKBP1Q8TBC3 707 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 ZNF419Q96HQ0 510 aaPredicted RBP16.3■□□□□ 0.2
SHQ1-202ENST00000444040 GPR22Q99680 433 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 CDH19Q9H159 772 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 COG4Q9H9E3 785 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 AGO3Q9H9G7 860 aaKnown RBP16.3■□□□□ 0.2
SHQ1-202ENST00000444040 ODC1P11926 461 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 RGS2P41220 211 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 EPGNQ6UW88 154 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 ARHGAP12Q8IWW6 846 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 LMNTD2Q8IXW0 634 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 C1QTNF1Q9BXJ1 281 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 ARHGEF38Q9NXL2 777 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 CORO1CQ9ULV4 474 aaPredicted RBP16.3■□□□□ 0.2
SHQ1-202ENST00000444040 CDY1Q9Y6F8 540 aa16.3■□□□□ 0.2
SHQ1-202ENST00000444040 TMEM114B3SHH9 223 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 AP3B1O00203 1094 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 TRIM13O60858 407 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 CYP11A1P05108 521 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 DNAJB2P25686 324 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 BRCC3P46736 316 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 COPAP53621 1224 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 ITGA7Q13683 1181 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 PRPSAP1Q14558 356 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 GRM3Q14832 879 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 ARTNQ5T4W7 220 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 C6orf163Q5TEZ5 329 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 SPATA22Q8NHS9 363 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 APBA2Q99767 749 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 OSBPL1AQ9BXW6 950 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 DMAP1Q9NPF5 467 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-202ENST00000444040 NUP205Q92621 2012 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 EIF4E1BA6NMX2 242 aaKnown RBP16.29■□□□□ 0.2
SHQ1-202ENST00000444040 SRGAP2BP0DMP2 458 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 AKR1A1P14550 325 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 CCNCP24863 283 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 MGAT3Q09327 533 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 PAN2Q504Q3 1202 aaKnown RBP16.29■□□□□ 0.2
SHQ1-202ENST00000444040 C1orf146Q5VVC0 180 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 BEND5Q7L4P6 421 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 LINC00523Q86TU6 105 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 LRRTM3Q86VH5 581 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 ZC3HC1Q86WB0 502 aaKnown RBP16.29■□□□□ 0.2
SHQ1-202ENST00000444040 TRPV1Q8NER1 839 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 MICAL1Q8TDZ2 1067 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 USP33Q8TEY7 942 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 RNF34Q969K3 372 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 GATA5Q9BWX5 397 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-202ENST00000444040 OXSMQ9NWU1 459 aa16.29■□□□□ 0.2
SHQ1-202ENST00000444040 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-202ENST00000444040 PSMD3O43242 534 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms