RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 DLG2Q15700 870 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 ARTNQ5T4W7 220 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 MANEALQ5VSG8 457 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 HGSNATQ68CP4 663 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 IL31Q6EBC2 164 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 USP30Q70CQ3 517 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 DSG4Q86SJ6 1040 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 DNAAF5Q86Y56 855 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 DRC7Q8IY82 874 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 ATP11CQ8NB49 1132 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 OR7D4Q8NG98 312 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 FRS2Q8WU20 508 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 OR8D1Q8WZ84 308 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 FAM129BQ96TA1 746 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 PSMB7Q99436 277 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 ISCUQ9H1K1 167 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 PCED1AQ9H1Q7 454 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 SGK2Q9HBY8 427 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 MRPL47Q9HD33 250 aaKnown RBP15.57■□□□□ 0.08
LIMS3-201ENST00000437679 FBXL12Q9NXK8 326 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 SUSD2Q9UGT4 822 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 ADAMTS1Q9UHI8 967 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 HS3ST2Q9Y278 367 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 METTL12A8MUP2 240 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 FAM72CH0Y354 149 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 CBX4O00257 560 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 MID1O15344 667 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 SEMA4FO95754 770 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 ADH1BP00325 375 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 IL1BP01584 269 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 VAV1P15498 845 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 C5AR1P21730 350 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 CASP14P31944 242 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 L1CAMP32004 1257 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 SLC8A1P32418 973 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 ACSL1P33121 698 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 ETFBP38117 255 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 PSMD8P48556 350 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 GNA12Q03113 381 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 TRIM14Q14142 442 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 STPG1Q5TH74 334 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 FAM72AQ5TYM5 149 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 DCAF12L1Q5VU92 463 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 SPECC1LQ69YQ0 1117 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 FAM72DQ6L9T8 149 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 RETSATQ6NUM9 610 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 SLC23A3Q6PIS1 610 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 ERMP1Q7Z2K6 904 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 FAM72BQ86X60 149 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 CCDC114Q96M63 670 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 EPAS1Q99814 870 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 OMDQ99983 421 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 MAGEB5Q9BZ81 275 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 ATP13A1Q9HD20 1204 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 TMEM248Q9NWD8 314 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 MYO1AQ9UBC5 1043 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 ZNF212Q9UDV6 495 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 FZD10Q9ULW2 581 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 SLC6A14Q9UN76 642 aa15.56■□□□□ 0.08
LIMS3-201ENST00000437679 FARP1Q9Y4F1 1045 aaPredicted RBP15.56■□□□□ 0.08
LIMS3-201ENST00000437679 NYNRINQ9P2P1 1898 aaKnown RBP15.56■□□□□ 0.08
LIMS3-201ENST00000437679 CNOT1A5YKK6 2376 aaKnown RBP15.56■□□□□ 0.08
LIMS3-201ENST00000437679 DCHS1Q96JQ0 3298 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 A0A1W2PP55 124 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 TMEM191CA6NGB0 347 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 BNIP3LO60238 219 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 RNF8O76064 485 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 MT-CO1P00395 513 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 SERPINF2P08697 491 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 TPM1P09493 284 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 SRCP12931 536 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 MAOBP27338 520 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 CLCN6P51797 869 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 GFPT1Q06210 699 aaPredicted RBP15.55■□□□□ 0.08
LIMS3-201ENST00000437679 SLC20A2Q08357 652 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 FAM46CQ5VWP2 391 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 Q6ZVU0 165 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 NLRP14Q86W24 1093 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 HDDC3Q8N4P3 179 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 FNIP1Q8TF40 1166 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 DNASE2BQ8WZ79 361 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 SNX19Q92543 992 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 MIR1-1HGQ9H1L0 117 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 C6orf106Q9H6K1 298 aaPredicted RBP15.55■□□□□ 0.08
LIMS3-201ENST00000437679 TMEM9BQ9NQ34 198 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 DNAI1Q9UI46 699 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 FZD4Q9ULV1 537 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 CACNA1EQ15878 2313 aa15.55■□□□□ 0.08
LIMS3-201ENST00000437679 C4orf47A7E2U8 309 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 C1QTNF3-AMACRE9PGA6 284 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 ALOX15BO15296 676 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 CREB3O43889 395 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 RAMP2O60895 175 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 RNASEH2AO75792 299 aaKnown RBP15.54■□□□□ 0.08
LIMS3-201ENST00000437679 GOT1P17174 413 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 ENGP17813 658 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 GLDCP23378 1020 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 EPHB2P29323 1055 aa15.54■□□□□ 0.08
LIMS3-201ENST00000437679 ATXN3P54252 364 aaPredicted RBP15.54■□□□□ 0.08
LIMS3-201ENST00000437679 TSR1Q2NL82 804 aaKnown RBP15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms