RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SLCO3A1Q9UIG8 710 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 ERVW-1Q9UQF0 538 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 PCDHA3Q9Y5H8 950 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 CXorf51AA0A1B0GTR3 108 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 SPOPO43791 374 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 MT-CO1P00395 513 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 ASLP04424 464 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 POLR2EP19388 210 aaKnown RBP12.72□□□□□ -0.37
USP40-205ENST00000430158 COL9A1P20849 921 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 PRKCHP24723 683 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 NTSR1P30989 418 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 HOXA6P31267 233 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 CTNNA1P35221 906 aaKnown RBP12.72□□□□□ -0.37
USP40-205ENST00000430158 YBEYP58557 167 aaPredicted RBP12.72□□□□□ -0.37
USP40-205ENST00000430158 ARF5P84085 180 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 ECT2LQ008S8 904 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 SATB1Q01826 763 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 ANKRD20A8PQ5CZ79 823 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 NUDT18Q6ZVK8 323 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 C1orf210Q8IVY1 113 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 DCAF4L2Q8NA75 395 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 KCTD6Q8NC69 237 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 FRS2Q8WU20 508 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 ALG3Q92685 438 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 RNF157Q96PX1 679 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 TSGA10Q9BZW7 698 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 CIPCQ9C0C6 399 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 SLC39A8Q9C0K1 460 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 CACNA2D2Q9NY47 1150 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 PYCARDQ9ULZ3 195 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 GUCA1BQ9UMX6 200 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 HS3ST2Q9Y278 367 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 STON1Q9Y6Q2 735 aa12.72□□□□□ -0.37
USP40-205ENST00000430158 RASA4BC9J798 803 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 DDX3YO15523 660 aaKnown RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 RASA4O43374 803 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 KRT86O43790 486 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 ATP9BO43861 1147 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 ATG13O75143 517 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 ZNF821O75541 412 aaPredicted RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 PTMAP06454 111 aaKnown RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 ATP5BP06576 529 aaKnown RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 SRPRAP08240 638 aaKnown RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 GJC1P36383 396 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 ARL4AP40617 200 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 CDKN2BP42772 138 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 NUMBP49757 651 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 STK19P49842 368 aaPredicted RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 NDST2P52849 883 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 SULT2A1Q06520 285 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 ADCY2Q08462 1091 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 SERINC3Q13530 473 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 KRT81Q14533 505 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 PAFAH1B3Q15102 231 aaKnown RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 CRY1Q16526 586 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 NCBP2-AS2Q69YL0 99 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 SLC9A4Q6AI14 798 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 KIAA1211LQ6NV74 962 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 MFSD7Q6UXD7 560 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 CCDC117Q8IWD4 279 aaPredicted RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 NETO2Q8NC67 525 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 UCMAQ8WVF2 138 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 ACDQ96AP0 544 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 VOPP1Q96AW1 172 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 HMCESQ96FZ2 354 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 HES6Q96HZ4 224 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 HERPUD2Q9BSE4 406 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 LZTFL1Q9NQ48 299 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 DDX56Q9NY93 547 aaKnown RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 VPS28Q9UK41 221 aa12.71□□□□□ -0.37
USP40-205ENST00000430158 RIF1Q5UIP0 2472 aaKnown RBP12.71□□□□□ -0.37
USP40-205ENST00000430158 PLXND1Q9Y4D7 1925 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 KNL1Q8NG31 2342 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 LRRD1A4D1F6 860 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 TTC34A8MYJ7 566 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 K7ERQ8 282 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 SMAD6O43541 496 aaKnown RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 KDELR3O43731 214 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 NRDCO43847 1150 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 RAMP2O60895 175 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 FTCDO95954 541 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 HLA-EP13747 358 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 WASP42768 502 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 CXCL12P48061 93 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 CCR3P51677 355 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 NAP1L1P55209 391 aaKnown RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 SLC10A2Q12908 348 aaPredicted RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 CAMK2GQ13555 558 aaPredicted RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 POLD3Q15054 466 aaPredicted RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 IFI16Q16666 785 aaKnown RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 PARP15Q460N3 678 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 DCAF12L1Q5VU92 463 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 SPOCD1Q6ZMY3 1216 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 TRMT11Q7Z4G4 463 aaKnown RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 MAP7D3Q8IWC1 876 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 CHPFQ8IZ52 775 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 PLD5Q8N7P1 536 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 EXD1Q8NHP7 514 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 CELF6Q96J87 481 aaKnown RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 RPL10LQ96L21 214 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms