RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 TRIM48Q8IWZ4 208 aa12.23□□□□□ -0.45
UBR4-205ENST00000417040 DEFB106AQ8N104 65 aa12.23□□□□□ -0.45
UBR4-205ENST00000417040 APBB2Q92870 758 aa12.23□□□□□ -0.45
UBR4-205ENST00000417040 POLLQ9UGP5 575 aa12.23□□□□□ -0.45
UBR4-205ENST00000417040 HACL1Q9UJ83 578 aa12.23□□□□□ -0.45
UBR4-205ENST00000417040 MRPS7Q9Y2R9 242 aaKnown RBP12.23□□□□□ -0.45
UBR4-205ENST00000417040 PRKAB1Q9Y478 270 aa12.23□□□□□ -0.45
UBR4-205ENST00000417040 RNF225M0QZC1 329 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 POMCP01189 267 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 USP17L7P0C7H9 530 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 HNRNPLP14866 589 aaKnown RBP eCLIP12.22□□□□□ -0.451e-22■■□□□ 13.8
UBR4-205ENST00000417040 GLRA2P23416 452 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 POLD2P49005 469 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 PDK4Q16654 411 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 KHDRBS2Q5VWX1 349 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 SPESP1Q6UW49 350 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 GCNT7Q6ZNI0 430 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 ARHGAP36Q6ZRI8 547 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 CAMK1DQ8IU85 385 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 KATNAL2Q8IYT4 538 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 CENPIQ92674 756 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 PGLYRP2Q96PD5 576 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 UBXN6Q9BZV1 441 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 OSGEPL1Q9H4B0 414 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 ZNRF3Q9ULT6 936 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 CEP170BQ9Y4F5 1589 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 NR4A1P22736 598 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 NAGLUP54802 743 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 TRIM32Q13049 653 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 COMMD2Q86X83 199 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 ACTRT2Q8TDY3 377 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 FAR1Q8WVX9 515 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 CRAMP1Q96RY5 1269 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 SLC25A23Q9BV35 468 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 KIFC1Q9BW19 673 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 OVOS2A0A0J9YW53 1432 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 OVOS2Q6IE36 1432 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 FFAR3O14843 346 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 GPR42O15529 346 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 MAP3K13O43283 966 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 YBX3P16989 372 aaKnown RBP eCLIP12.22□□□□□ -0.451e-10■□□□□ 10.1
UBR4-205ENST00000417040 RPL22P35268 128 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 TTC27Q6P3X3 843 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 UNC5AQ6ZN44 842 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 TEKT5Q96M29 485 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 RTFDC1Q9BY42 306 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 SALL1Q9NSC2 1324 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 NEXMIFQ5QGS0 1516 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 ATP6AP2A0A1C7CYW4 349 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 DDTLA6NHG4 134 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 TIPRLO75663 272 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 ATP6AP2O75787 350 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 NTRK1P04629 796 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 SNRPB2P08579 225 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 RPL5P46777 297 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 PTSQ03393 145 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 SPDYCQ5MJ68 293 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 MARC1Q5VT66 337 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 PRELID2Q8N945 189 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 SPATA20Q8TB22 786 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 BAP1Q92560 729 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 PRMT6Q96LA8 375 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 NOL11Q9H8H0 719 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 PRKAG3Q9UGI9 489 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 BARX2Q9UMQ3 279 aaPredicted RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 REXO2Q9Y3B8 237 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 GMPPBQ9Y5P6 360 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 TMEM114B3SHH9 223 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 TRDMT1O14717 391 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 NDUFB5O43674 189 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 SEMA3DO95025 777 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 CCNA2P20248 432 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 PLCL1Q15111 1095 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 CWF19L1Q69YN2 538 aaKnown RBP12.22□□□□□ -0.45
UBR4-205ENST00000417040 CITED4Q96RK1 184 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 OSMRQ99650 979 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 BPIFA1Q9NP55 256 aa12.22□□□□□ -0.45
UBR4-205ENST00000417040 CAMSAP1Q5T5Y3 1602 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 USP31Q70CQ4 1352 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 CLTBP09497 229 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 CCDC166P0CW27 439 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 COX7A2P14406 83 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 NR1H2P55055 460 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 DUPD1Q68J44 220 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 GALNT5Q7Z7M9 940 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 SPOCK2Q92563 424 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 ADGRE3Q9BY15 652 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 REEP1Q9H902 201 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 ZFP14Q9HCL3 533 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 PNMA8CA0A1B0GUJ8 204 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 TFECO14948 347 aaPredicted RBP12.21□□□□□ -0.45
UBR4-205ENST00000417040 SSNA1O43805 119 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 PLOD3O60568 738 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 CST1P01037 141 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 VEGFAP15692 232 aaPredicted RBP12.21□□□□□ -0.45
UBR4-205ENST00000417040 YWHAZP63104 245 aaKnown RBP12.21□□□□□ -0.45
UBR4-205ENST00000417040 PGM5Q15124 567 aa12.21□□□□□ -0.45
UBR4-205ENST00000417040 ZC3H12AQ5D1E8 599 aaKnown RBP12.21□□□□□ -0.45
UBR4-205ENST00000417040 KIAA0408Q6ZU52 694 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms