RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PNPLA8Q9NP80 782 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ARMCX1Q9P291 453 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ZNF236Q9UL36 1845 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 KCNU1A8MYU2 1149 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 BUD23O43709 281 aaKnown RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 LYPLA1O75608 230 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 OAS1P00973 400 aaKnown RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 SLC4A1P02730 911 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ALDOAP04075 364 aaKnown RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 GLRBP48167 497 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 COG7P83436 770 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 SLC18A2Q05940 514 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 RASA2Q15283 850 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 PIK3R6Q5UE93 754 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ZNF419Q96HQ0 510 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 GORASP1Q9BQQ3 440 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 SPON2Q9BUD6 331 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 FTHL17Q9BXU8 183 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 HIPK3Q9H422 1215 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 FBXO44Q9H4M3 255 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ZFP69BQ9UJL9 534 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 FNDC3AQ9Y2H6 1198 aaKnown RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 IRF1P10914 325 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 MYL2P10916 166 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 MLNP12872 115 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 HCAR3P49019 387 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 KCNQ1P51787 676 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 NEK3P51956 506 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 MLLT6P55198 1093 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 PDE1CQ14123 709 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 CYB5D1Q6P9G0 228 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 KCNMB4Q86W47 210 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 CHSY1Q86X52 802 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 ZSCAN18Q8TBC5 510 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-203ENST00000394269 PXYLP1Q8TE99 480 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 HHIPL1Q96JK4 782 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 TRIM62Q9BVG3 475 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 SMOC2Q9H3U7 446 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 SP110Q9HB58 689 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 PRKAG3Q9UGI9 489 aa11.35□□□□□ -0.59
TCOF1-203ENST00000394269 MTSS1O43312 755 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 HAPLN1P10915 354 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SERPINB3P29508 390 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ETV4P43268 484 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ERFP50548 548 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.34□□□□□ -0.59
TCOF1-203ENST00000394269 CCDC91Q7Z6B0 441 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 RNF135Q8IUD6 432 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 DCLK2Q8N568 766 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ACVR1CQ8NER5 493 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 PPP1R36Q96LQ0 422 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 OSBPL2Q9H1P3 480 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 TRHDEQ9UKU6 1024 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 MTO1Q9Y2Z2 717 aaKnown RBP11.34□□□□□ -0.59
TCOF1-203ENST00000394269 A8MUI8 341 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 PHGDHO43175 533 aaKnown RBP11.34□□□□□ -0.59
TCOF1-203ENST00000394269 TLR5O60602 858 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 HLA-DQB2P05538 268 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 GALTP07902 379 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 CPA2P48052 419 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SERPINB9P50453 376 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 NCALDP61601 193 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 CDH17Q12864 832 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 GPNMBQ14956 572 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 E2F5Q15329 346 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 CNGA3Q16281 694 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 FASTKD1Q53R41 847 aaKnown RBP11.34□□□□□ -0.59
TCOF1-203ENST00000394269 NAPEPLDQ6IQ20 393 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SH2D5Q6ZV89 423 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ARHGAP12Q8IWW6 846 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SLAIN1Q8ND83 568 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 PSMG2Q969U7 264 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 HMCESQ96FZ2 354 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 CASD1Q96PB1 797 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 TMEM120AQ9BXJ8 343 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SMPD4Q9NXE4 827 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SLC2A6Q9UGQ3 507 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ZNF180Q9UJW8 692 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SF3B1O75533 1304 aaKnown RBP eCLIP11.34□□□□□ -0.596e-6■■■■■ 114.9
TCOF1-203ENST00000394269 SHROOM3Q8TF72 1996 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 MAFKO60675 156 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 GJB3O75712 270 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SPATA31D3P0C874 917 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 OR1E1P30953 314 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 FAM189BP81408 668 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SLC10A7Q0GE19 358 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 LACTB2Q53H82 288 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-203ENST00000394269 BRMS1LQ5PSV4 323 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 FSTL4Q6MZW2 842 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ESRP1Q6NXG1 681 aaKnown RBP11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SPATA31D4Q6ZUB0 917 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 TTC7BQ86TV6 843 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 DENND6AQ8IWF6 608 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 AUTS2Q8WXX7 1259 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 IGSF8Q969P0 613 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 HAPLN3Q96S86 360 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 PLCD4Q9BRC7 762 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 SHCBP1LQ9BZQ2 653 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 CD248Q9HCU0 757 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ARHGEF38Q9NXL2 777 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms