RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ITGA8P53708 1063 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 TRIM71Q2Q1W2 868 aaKnown RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 RASIP1Q5U651 963 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 TLDC1Q6P9B6 456 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 SLC26A9Q7LBE3 791 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 PWWP2AQ96N64 755 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 NUDCD1Q96RS6 583 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 TTC1Q99614 292 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 ZFATQ9P243 1243 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 TLK1Q9UKI8 766 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 A0A0C4DFX4 3053 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 PFDN6O15212 129 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 COCHO43405 550 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 PSTPIP1O43586 416 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 ACSL4O60488 711 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 SNAP91O60641 907 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 COILP38432 576 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 CD86P42081 329 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 CFAP157Q5JU67 520 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 THEMIS2Q5TEJ8 643 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 RSPO2Q6UXX9 243 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 PTAR1Q7Z6K3 402 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 ZNF598Q86UK7 904 aaKnown RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 BBOF1Q8ND07 529 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 EXD1Q8NHP7 514 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 CDC26Q8NHZ8 85 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 AGR3Q8TD06 166 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 GTSE1Q9NYZ3 720 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 EVLQ9UI08 416 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 NEU2Q9Y3R4 380 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 KCNU1A8MYU2 1149 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 AGTP01019 485 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 SERPINF2P08697 491 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 CA4P22748 312 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 NFKBIAP25963 317 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ECHS1P30084 290 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 SMARCB1Q12824 385 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ATXN7L2Q5T6C5 722 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 BBS7Q8IWZ6 715 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 LINC01465Q8N7H1 131 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 HMGB4Q8WW32 186 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 BTN2A3PQ96KV6 586 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 NSUN3Q9H649 340 aaKnown RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 AVENQ9NQS1 362 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 MTRRQ9UBK8 725 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ZC3H7BQ9UGR2 993 aaKnown RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 PCDHGC4Q9Y5F7 938 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 RPS6KL1Q9Y6S9 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ARFGEF1Q9Y6D6 1849 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 CARNS1A5YM72 827 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 FAM187AA6NFU0 413 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 E9PAM4 449 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 CCL22O00626 93 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ADH1CP00326 375 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ABL2P42684 1182 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 SPDYCQ5MJ68 293 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ARHGAP17Q68EM7 881 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ARMCX6Q7L4S7 300 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ITFG1Q8TB96 612 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TLCD1Q96CP7 247 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 DCUN1D1Q96GG9 259 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 CRISPLD2Q9H0B8 497 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 PABPC3Q9H361 631 aaKnown RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 PCDH18Q9HCL0 1135 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 C20orf96Q9NUD7 363 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 MARCH5Q9NX47 278 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3DA0A087WVF3 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3IA0A087WXS9 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3EA0A087X179 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3KA0A087X1G2 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3FA6NER0 549 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3LB9A6J9 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 RASGRF2O14827 1237 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 PHF2O75151 1096 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 PPFIA2O75334 1257 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 DAB1O75553 588 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3HP0C7X1 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 MMP13P45452 471 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 OGDHQ02218 1023 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3GQ6DHY5 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3CQ6IPX1 549 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 CHST9Q7L1S5 443 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 TBC1D3Q8IZP1 549 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-205ENST00000392004 FBF1Q8TES7 1133 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 AGAP11Q8TF27 550 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 HTR3CQ8WXA8 447 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 ATP2A3Q93084 1043 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 SGF29Q96ES7 293 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 RMDN2Q96LZ7 410 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 CRLS1Q9UJA2 301 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 DNAJC16Q9Y2G8 782 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 APC2O95996 2303 aa10.5□□□□□ -0.73
COL6A3-205ENST00000392004 C2CD4BA6NLJ0 364 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ABLIM1O14639 778 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RNASEH2AO75792 299 aaKnown RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CNTN5O94779 1100 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SOX9P48436 509 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 FBXL22Q6P050 247 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 HJURPQ8NCD3 748 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 BPIFB1Q8TDL5 484 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms