RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TYW5A2RUC4 315 aaKnown RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 MSI1O43347 362 aaKnown RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 PRPSAP2O60256 369 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 HTR7P34969 479 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 STARD6P59095 220 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 NRG1Q02297 640 aaPredicted RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 SCAPQ12770 1279 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 NME3Q13232 169 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 AUHQ13825 339 aaKnown RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 MORF4L2Q15014 288 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 DHCR24Q15392 516 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 KYNUQ16719 465 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 C15orf59Q2T9L4 293 aaPredicted RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 ZC3H12AQ5D1E8 599 aaKnown RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 TNFAIP8L3Q5GJ75 292 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 SH3PXD2AQ5TCZ1 1133 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 ZNF852Q6ZMS4 543 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 RFX6Q8HWS3 928 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 RIN3Q8TB24 985 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 XPO6Q96QU8 1125 aaKnown RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 RBM15Q96T37 977 aaKnown RBP eCLIP10.46□□□□□ -0.74
VPS53-202ENST00000389040 OSBPL2Q9H1P3 480 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 EBF3Q9H4W6 596 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 HPS4Q9NQG7 708 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 PIGVQ9NUD9 493 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.46□□□□□ -0.74
VPS53-202ENST00000389040 DONSONQ9NYP3 566 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 SAE1Q9UBE0 346 aaPredicted RBP10.46□□□□□ -0.74
VPS53-202ENST00000389040 FBXL21Q9UKT6 434 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 WNT6Q9Y6F9 365 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 DOCK8Q8NF50 2099 aa10.46□□□□□ -0.74
VPS53-202ENST00000389040 APOC4-APOC2K7ER74 178 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 GFRA2O00451 464 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 IFNB1P01574 187 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 APOC2P02655 101 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 IRF1P10914 325 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 ADRA1BP35368 520 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 MMP13P45452 471 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 CCT5P48643 541 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 OXCT1P55809 520 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 IFI35P80217 286 aaPredicted RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 MLF2Q15773 248 aaPredicted RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 CDO1Q16878 200 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 LONRF1Q17RB8 773 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 BOLA3Q53S33 107 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 TRIM67Q6ZTA4 783 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 CYP4V2Q6ZWL3 525 aaPredicted RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 BMP8AQ7Z5Y6 402 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 NLRP14Q86W24 1093 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 ADAM32Q8TC27 787 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 FAM172AQ8WUF8 416 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 TMA16Q96EY4 203 aaKnown RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 SERPINB12Q96P63 405 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 CALN1Q9BXU9 219 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 ARHGEF3Q9NR81 526 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 ZNF638Q14966 1978 aaKnown RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 NUP210Q8TEM1 1887 aaPredicted RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 A0A0A0MRY4 1105 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 TRDMT1O14717 391 aaKnown RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 NCAM2O15394 837 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 NARSO43776 548 aaKnown RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 TCEA3O75764 348 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 PENKP01210 267 aaPredicted RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 HMBSP08397 361 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 ADH5P11766 374 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 MAGEA4P43358 317 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 CDH6P55285 790 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 HDAC4P56524 1084 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 ATP11AP98196 1134 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 PPARDQ03181 441 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 DPYSL3Q14195 570 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 C5orf22Q49AR2 442 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 RAB6CQ53S08 254 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 RABGAP1LQ5R372 815 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 LY6G5CQ5SRR4 150 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 RNASEH2BQ5TBB1 312 aaKnown RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 PIK3R6Q5UE93 754 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 OTUD1Q5VV17 481 aaPredicted RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 RNF43Q68DV7 783 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 SYNPOQ8N3V7 929 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 KCNV2Q8TDN2 545 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 ASIC4Q96FT7 647 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 COL25A1Q9BXS0 654 aaPredicted RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 MAK16Q9BXY0 300 aaKnown RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 TKTL2Q9H0I9 626 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 RAB6CQ9H0N0 254 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 PPANQ9NQ55 473 aaKnown RBP10.45□□□□□ -0.74
VPS53-202ENST00000389040 SHOC2Q9UQ13 582 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 PIAS3Q9Y6X2 628 aa10.45□□□□□ -0.74
VPS53-202ENST00000389040 DOCK6Q96HP0 2047 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 E7EVH7 732 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 F5H5T6 163 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 SPECC1L-ADORA2AF8WAN1 911 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 EBAG9O00559 213 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 MCF2LO15068 1137 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 CACNG3O60359 315 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 FAM107AO95990 144 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 CYP17A1P05093 508 aa10.44□□□□□ -0.74
VPS53-202ENST00000389040 ABHD2P08910 425 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms